Cucurbita moschata (crookneck pumpkin): 111441971
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Entry
111441971 CDS
T05248
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111441971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111441971
03012 Translation factors [BR:
cmos03012
]
111441971
Enzymes [BR:
cmos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111441971
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111441971
Translation factors [BR:
cmos03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111441971
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
BEX
ATPase
NACHT
Motif
Other DBs
NCBI-GeneID:
111441971
NCBI-ProteinID:
XP_022934958
UniProt:
A0A6J1F963
LinkDB
All DBs
Position
Unknown
AA seq
1033 aa
AA seq
DB search
MSLRTAVSSHSLVWKCPFLLPRLSVLRPVISAFAMSYRPNYQGGRRGSSSGGRRGGGRRG
GGGGSGGRGGGGRGEQRWWDPVWRAERLRQNAAEMEVLNEDEWWTKMDQMKRGGEQELII
KRNYSRRDQEILYDMAHQQGLYFHAYNKGKTLVVSKVPLPDYRADLDERHGSTQKEIRMT
TDIERRVGNLLDDLQGQGREHSLSSTASAEGGKQTPTSINNTKPVYKLETDLAKEKLSAE
LKQKQEEMKGSDGLKSMLAFREKLPAFNVKSEFIKAMTENQVLVVSGETGCGKTTQLPQF
ILEEEISKLRGADCRIICTQPRRISAISVAARISSERGESLGETVGYQIRLEAKQSAQTR
LLFCTTGVLLRQLVQDPQLTGVSHLLVDEIHERGMNEDFLLIILRNLLPRRPDLRLILMS
ATINADLFSKYFVNAPTLHIPGKTFSVTEFFLEDVLEKTRYNIKSEFDNFEGNSSRRRRQ
QESKKDPLSELFEDVDIDAQYKAYSSSTRKSLEAWSGAQLDLSLVESTIEYICRHEGYGA
ILVFLTGWDDISKLLDKAKANSYLGDSGKFLILPLHGSMPTINQREIFDSPPPAKRKIVL
ATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPG
VCYRLYPKIIHDAMLQYQLPEILRTPLQELCLHIKSLQLGTAGSFLAQALQPPDPLAVQN
AIELLKTIGALDDMEELTPLGRHLCSLPLDPNIGKMLLMGSIFQCLNPALTIAAALAHRD
PFILPINRKEEANDAKKSFSGDSCSDHVALLKAFEGWKDAKRNGAERSFCWENFLSPVTL
QMMDDMRMQFLDLLSDIGFVNKSRGPSAYNQYSHDLEMVCAVLCAGLYPNVVQCKRRGKR
TAFYTKEVGKVDIHPGSVNAGVHIFPLPYMIYSEKVKTTSIYIRDSTNISDYALLLFGGN
LVPTKTGDGIEMLGGYLHFSASKNVLDLIKKLRGELDKLLNRKIEEPSFDITTEGKGVVA
AAVELLHSQVVHH
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgtccctccgaaccgccgtttctagtcactctctggtctggaagtgcccatttcttctg
cctcgactttctgtacttcggccagttatttcagcattcgcaatgtcatatcggcccaac
tatcaaggtggccgtcgtggcagctcatctggaggaagacgtggcggtggccgacgcggc
ggaggtggaggtagcggaggcagaggcggcggaggtagaggcgagcaacgttggtgggac
ccggtctggcgcgctgagcgtctgcgacaaaatgctgctgagatggaggttcttaatgaa
gatgaatggtggactaagatggaccagatgaaaagaggaggggaacaagagttgataatt
aagcgtaattatagtcgaagagaccaagaaatcctttatgatatggctcatcagcagggt
ctctatttccatgcatataataaggggaaaacccttgtggttagtaaagttccattgcca
gattaccgggctgatctcgatgaacgacatgggtccacacaaaaggagattcgaatgact
acggatatagagaggagggttggaaatcttctggatgacttgcagggtcagggaagggag
cacagtctttcttctactgcatcagctgaaggaggcaaacagactccaacttctataaat
aacacaaaacctgtctacaagttggagactgatttagcaaaggagaaacttagtgccgaa
cttaagcagaaacaggaagagatgaaaggaagcgatggcttaaaatcaatgctggcattt
agagaaaagcttcctgccttcaatgtaaaatctgaatttataaaagcaatgacagaaaac
caggtattggttgtttcaggagagacaggttgtggtaaaaccacacagctccctcaattt
attttggaggaggagatatcaaaacttcgtggtgctgattgtagaataatatgcacccaa
cctcggcgcatctctgctatttcagtggctgctcgtatatcctctgaaaggggagaaagt
cttggtgaaacagttggatatcaaatacgactggaagcaaaacaatcagcccagactcga
ctactattttgcaccactggagttctactccggcagttggttcaggacccacaattgact
ggtgttagccatttgcttgtggatgaaatacatgaaaggggcatgaatgaggatttttta
ttaataattctgcgcaaccttcttcctcggcggccagatttgcgtcttattttaatgagt
gccaccattaatgcagatttgttctccaaatactttgtgaatgccccaacgctacacata
ccaggaaaaactttttctgtgacagagttttttttagaggatgtgctggagaaaactcgt
tataatatcaagtcagagttcgacaactttgaaggaaattcaagtagaagaaggagacaa
caagaatccaagaaggatcctttatcagaattatttgaggatgttgatattgatgctcag
tacaaagcttatagttcatctacgagaaagtcacttgaagcctggtctggggcacaactt
gatttgagtctggtggaatcaactattgaatatatttgtcgccatgaaggttatggtgct
atacttgtatttcttactggttgggatgacatttctaaactgctcgacaaagctaaagca
aacagttatcttggagattctggaaagttcttaatccttcctttacatggttccatgcca
accattaatcagcgagaaatatttgatagtcctccccccgccaaaagaaaaattgtgctg
gcaactaacattgctgagagtagtatcaccatagatgacgttgtctatgtcatagattgt
ggaaaggcgaaggaaacgagttatgatgctctgaacaaacttgcttgtctgctaccttca
tggatttccaaggcttcagcacaccagaggcgaggtcgtgctggtcgtgtgcaacctggt
gtttgttatagactctatccaaaaattatccacgacgcaatgcttcagtatcagttacct
gaaattctgagaactcctttacaagaactttgtctgcatatcaaaagtttgcagctagga
actgctgggtcatttttggcacaggcattacagccaccagaccctcttgctgtccagaat
gccattgaacttctcaaaacaattggtgctttagatgatatggaggagcttacaccactg
ggtcgtcatctttgctccttacctctggacccaaatatagggaagatgcttctcatgggt
tctatatttcaatgcctgaatcctgccttgaccattgctgctgctctggctcaccgcgat
ccatttattttgcccattaataggaaagaggaagcaaatgatgcaaagaaatcattttcg
ggtgattcttgcagtgaccacgtcgctcttcttaaagcctttgaaggatggaaggatgca
aaaagaaatggagctgaaagatcgttctgctgggaaaacttcttatctccagtaaccttg
cagatgatggatgacatgagaatgcagtttctagatctattatctgatattggctttgtg
aacaagtccaggggtccaagtgcatacaaccaatacagtcacgatttggagatggtgtgt
gcagtgctttgtgctggactataccctaatgtcgtacaatgtaaaagaagaggaaagagg
acagccttctatactaaggaagttgggaaagtggatattcatcctggatctgtcaatgca
ggggttcatatcttccctcttccttacatgatttacagcgagaaggtcaaaacaactagt
atatacatcagagactctaccaatatatcagattatgcccttttgttgtttggtggtaat
cttgtacctaccaaaactggagatggcattgaaatgctcggtggctaccttcatttctct
gcttcaaagaacgttttagatttaataaagaaattgcgcggggaacttgacaagcttttg
aataggaagatcgaggagccgagttttgacattactacagaaggaaaaggagtggtggca
gctgcagtcgagttactgcacagtcaagttgtacatcattaa
DBGET
integrated database retrieval system
