Cucurbita moschata (crookneck pumpkin): 111442248
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Entry
111442248 CDS
T05248
Name
(RefSeq) THO complex subunit 4D-like
KO
K12881
THO complex subunit 4
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03013
Nucleocytoplasmic transport
cmos03015
mRNA surveillance pathway
cmos03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111442248
09122 Translation
03013 Nucleocytoplasmic transport
111442248
03015 mRNA surveillance pathway
111442248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111442248
03041 Spliceosome [BR:
cmos03041
]
111442248
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111442248
TREX complex
111442248
Spliceosome [BR:
cmos03041
]
Complex C
Other components
EJC/TREX
111442248
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111442248
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
Btz
Motif
Other DBs
NCBI-GeneID:
111442248
NCBI-ProteinID:
XP_022935328
UniProt:
A0A6J1FAB9
LinkDB
All DBs
Position
Unknown
AA seq
295 aa
AA seq
DB search
MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSYNGGRAVVIGSVRRGPLGINARPS
AFSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI
GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNADTPV
SARINVTGVNGRSRRTVVLTSESGRTGSSHAVNPFPGPSHRGGLRSGRGRGRGRGGWSRG
LGGGGGRGLGGGGRGRGRGSGSGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atggctactcctttggatatgtccctagaggatgtgataaagaagaataaccgtgagaag
cttagagcacgaggtagggctcgtcgtgggcgtggtgcaggtgggtcttataatggggga
agagcagtagtgatagggtcagttcgtagaggtccgctcggcataaatgcaaggccatct
gctttctcaattagcaagcccccacgcagaatgaagaatgttcagtggcagcatgattta
tttgaagacagtcttagagcttcagggatttctggaattgaaattggcacaaagttgtac
gtttctaacttggattatggggtgaccaaagaagatataagggagttgttctctgagatt
ggagacctgaaaagatttgcaattcattatgacaaaaatggccgtccaagtggctcagcc
gaggtggtatatactcgcagaagtgatgcatttgctgctctaaagcgctacaacaatgtg
ttactggatgggaagccaatgaagattgaaatgcttggagataatgctgacacgccagtt
tctgcacgcataaacgttactggagtgaatggaagaagcaggagaaccgttgttctaacg
tctgaatctggtcgtactggtagctcccacgcggtcaacccttttcctggtccaagccat
cgtggagggctgaggagtggtcgcggtcgtggtcgtgggcgagggggctggagccgtggt
ctaggaggtggaggaggccgtggtctaggaggtggaggccgtggccgagggcgtggtagt
ggtagtggtcgtggccgtggccaaggaagaaagaaacctgtggagaagtcctccgctgaa
ctcgacaaggagcttgaaaactaccatgctgaagccatgcaaacctga
DBGET
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