Cucurbita moschata (crookneck pumpkin): 111442777
Help
Entry
111442777 CDS
T05248
Name
(RefSeq) uncharacterized protein LOC111442777 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111442777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmos03021
]
111442777
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111442777
Transcription machinery [BR:
cmos03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111442777
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111442777
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf-C2H2_4
zf-C2H2_REST
zf-C2H2
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
111442777
NCBI-ProteinID:
XP_022936065
UniProt:
A0A6J1FCJ8
LinkDB
All DBs
Position
Unknown
AA seq
1085 aa
AA seq
DB search
MEMESSRRPFDRTREPGLKKQRLADEAERGGNINGRPFPQRPIGSGTNIVQPRFRASDRD
SGSSDSGRGGYQPQPLQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAISAT
VCANILEVSSEQKLPSLYLLDSIVKNIGRDYIKYFAAKLPEVFCKAYRQVDSPVHTSMRH
LFGTWKGVFPPQTLQVIEKELGFITNSGSSSGTISSKPELHSQRPPHSIHVNPKYIERQR
LQQSGRVKGMTSDATIATTNVTQDVAQAKISTGRPWADASIKVHDIQRPLRDAPNDIAQE
KNITAAYADYEYGSDLSRTPGIGRRAVDEGRDKPWSTTGSNLAEKLSGQRNGFNIKLGYE
NYPAPRSANTGARLLPTQNFSSSSSNRGLSTNWKNSEEEEFMWGEMNSMLTGHGASAIAS
SIGKDQWTPEDSDNSGIENKLLSLRDTGGSVDREASSDSQSSEQRELGDSGQQRSSMWQV
QEPLSLDGLRGGIPKKNSAQSGGYGATLTALSGGNSSVDQMGGRPQITSSNIGASGHEFL
NKGGSGSIGTVGQQIFPSRNVAFASGQPPLHQRPPSPLSVDHIPHQMPNHKTSSFSNLDP
RKRHLQDASLGRHPNVQSDNLKKPQPQDRQAAASPIPTSQPRQPFSLSESLKPDVRQSEL
SRQHAVSIPGTDFGPPSSAGTVPVRLPAEILGETSTSSLLAAVMKSGIFSNHSIASSMQQ
NISFQDAGNMQPHSNVKPQLPSQSSPAHTQTTFSEPKTAGESSLGPLESPSALVKLSQTK
VEDTPLPSDPPSPSSPMNSASTETSNVVNDSSTPISNLLSSLVAKGLISASKGELTNSAT
SQMTAQPENLKLGDAVTCSVPVPSIPVTSSSQSSTILESSSKAAAKSSTSPPPYATTEIT
NLIGFEFSSHVIRKFQPSVISGLFDDIPYQCKICGLRLKLEEQLDTHLQWHTLRTEANNS
NRAPRRWYPSSDDWISGNDILLHDAATSPDRCDMMEEVNEPMVPADEDHLVCVLCGELFE
DFYSHDLDKWMFKGAMYITIPSAVSERGSTIEQVARGPIVHTKCITESSLHDLGLATDIK
MEMDV
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagctcgcggagacctttcgatcgaacgagggaaccgggtttgaagaag
cagcgactggccgatgaggctgagcgcggtgggaacattaatggccggccgtttccgcag
agaccaattggttcggggaccaatattgtgcaacccagatttcgagcaagtgatagagat
tcgggaagcagtgattctggtcgaggggggtatcagcctcaaccactgcagcatcaggag
cttgtcagccaatacagaacagcccttgctgagctgactttcaattcgaaaccaatcatc
accaatttgaccataatcgcgggtgaaaatctccaggctgcaaaagccatctctgccacc
gtttgcgccaacattctcgaggtttccagtgagcagaagctaccatcactttatctattg
gacagtattgtgaagaatattggaagagactacataaaatactttgcagcaaagctgccc
gaggtattctgcaaagcttataggcaagttgactctcctgtacatacaagtatgagacat
ctttttggcacctggaaaggagtgtttcctcctcaaacactgcaggttatcgagaaagaa
cttggcttcataaccaacagtggttcttcttctgggaccatatcctcaaagccagaattg
cattcacaacgtccaccccatagtatccatgtaaatcccaagtatatagagagacaacgg
cttcaacagtcgggcagggtgaaaggaatgactagtgacgctactattgcaactacaaat
gtaactcaggatgttgcccaagccaaaattagcactggacgtccatgggcagatgcttca
attaaagtgcatgacattcagcgtccacttagagatgcaccaaatgatatagcacaagag
aagaacatcacggctgcatatgcagattatgaatatggttccgatctttcaaggactcca
ggtatcggaagaagggctgttgatgaagggcgagacaaaccctggtctacaactggtagc
aatttggcagagaagttatctggccaaagaaatgggttcaacatcaagcttggatatgaa
aattatcctgcacccaggtctgcaaacactggtgcacgtctactgcccacacaaaatttt
tcaagcagcagcagcaaccgaggattgtctactaactggaagaactctgaggaagaggag
tttatgtggggtgaaatgaactctatgttgacaggtcatggtgcatctgccattgccagt
agcattgggaaagatcaatggactcctgaggattcagataattcgggtattgaaaataag
ctattaagtttacgagatactgggggaagtgttgatagagaagcttccagtgattcacaa
tcatctgagcagagagaactgggggattctggacagcaaaggtcatcaatgtggcaagtg
caggagccattatctctggatgggctgagaggcgggattcctaaaaagaattcagctcag
tcaggaggatatggtgccactcttactgccctgtcaggtggtaactcttctgtggatcaa
atgggaggtcgaccacaaattacatcgtcgaatattggagcttcaggacatgaatttctg
aacaagggaggttcagggtccattgggactgtaggccagcaaatatttccatcacgaaat
gttgcattcgcatctggacagccacccttgcatcaacgtcccccttcaccattgtcagtg
gatcatattcctcatcaaatgcccaaccataaaacttcttcattttctaatcttgaccca
cgtaaaaggcatttacaggatgcttcccttggtcggcatcccaacgttcagtcagataac
cttaaaaaaccacagcctcaggaccgtcaagctgcagcctcccccatacctacttctcaa
cccaggcagccgttctctttatctgagtcactaaaacctgatgttaggcagtccgaactt
tcaagacagcatgcagtatctattccaggcactgattttggacctccttcatcagctggg
acagttccagttcgtttacctgcagaaattttgggagagacaagcactagtagtttgttg
gctgctgtaatgaagagtggaattttttccaaccattcaatagccagtagcatgcagcag
aatatcagcttccaagatgcaggaaatatgcaaccccattcaaacgtcaaacctcaacta
ccaagccagtcttctcctgcccatactcagacgacattctcagagccaaagactgcggga
gaatcttcattaggtcctcttgaaagcccgtcagctctggttaagctatctcaaactaag
gtagaagatactccgttgccatctgatccaccttcaccctcatctcctatgaatagtgca
tccacggaaacttcaaatgtggtaaacgactcttctaccccaatttctaaccttttgagc
tcattggttgcaaagggccttatatctgcttcaaaaggagagttaacaaatagtgcgact
tcccaaatgactgcgcagcctgaaaatttgaagttaggtgatgctgtgacatgttctgta
ccagttccttccatccccgttacttcttccagtcaatcatctacgatacttgaatcatct
tcaaaagctgctgctaagagctccactagtccacctccatatgccacaactgagataacc
aacctcataggctttgaatttagttcacatgttattcgaaaatttcagccatctgtgatc
agtggactctttgacgatattccatatcaatgtaagatctgtggtctgagactgaaactt
gaagaacagttggatacacacttgcagtggcacacgttaagaactgaggcaaacaattca
aatagggcaccaagaagatggtatccaagttcagatgattggatttctggaaatgatata
ctcttacatgatgctgccacttctccggacaggtgtgacatgatggaagaagttaatgag
ccaatggtacctgcagatgaagatcatttggtctgtgttttatgtggtgaactttttgaa
gatttttatagtcatgacttggataagtggatgttcaaaggagcaatgtatatcaccatc
ccatcagcggttagtgagagaggaagcacaattgaacaagttgctagaggacccatcgtt
cacacaaaatgtataactgaaagttcactacatgacttgggactggcaactgatattaag
atggaaatggatgtatga
DBGET
integrated database retrieval system
