Cucurbita moschata (crookneck pumpkin): 111442802
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Entry
111442802 CDS
T05248
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111442802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111442802
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
111442802
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_11
TPR_16
TPR_17
TPR_14
TPR_8
TPR_CcmH_CycH
TPR_12
TPR_9
TPR_19
ARM_TT21_C
TPR_7
BTAD
TPR_10
Motif
Other DBs
NCBI-GeneID:
111442802
NCBI-ProteinID:
XP_022936099
UniProt:
A0A6J1F7C5
LinkDB
All DBs
Position
Unknown
AA seq
1216 aa
AA seq
DB search
MVKETECCVVPGLSPAATEPEVEKAYHIEEEVAVEKDHVRESGTPCITSRQLQDTVNAHP
DDPSSHFKLGIFLWENGGSHDKAVAADHFLKSAKLDPQNAAAFKYLGDYYATFSVDIERA
LKCYQRAVSLDVHDFHSGEALCDLLHREGKESLEVAICKEASSKSTRAFWAFRRLGYLQV
FQKKWTEAVLSLQHAIRGYPSCADLWEALGLAYQRLGRFTAAIKSYARAIEIEGDRILAW
VESGNIFLMLGLFKKGVEHFQRALEISPKSITAQFGLSSGLLGLAKECINRGAFKWASFL
LEEASKVARGSTYLAGNLSCIWKLLGDIQHTYAKCYPWMEEDWGLCAESFRTSILSWKQT
RSLALLSAKCSYQQALHLAPWEANIYTDIAITLDIISTLNGDSGSEFNSWQISEKMTLGA
LMLEGDNHEFWVAMGCISNHDALKQHAFIRALQLDGSLAGAWAYLGKLYRNRGEMQLARQ
AFNYARSIDPSLAIPWAGMSADLNISESTSDEAFESCLRAASILPVAEFQIGLAKLSLQA
GHLSSPQVFGAIRQAVQLAPCYPESYNLNGLAFEAQLDYQSAVAAYRLAHLTTSHFSDRV
PRSHVRDISINLARSLCMVGNFFEASQEYENLSKEGMLDIEGLQVYAFSLWKLGKNDQAL
STVRTLASCISTMEKTRTAASVGFICRLLYSISGLDSAINSIMKMPTHFFRSSKVSFVVA
AIHAIDGCDRLDSIVLSCRSCLQSHEEITKMHILIAFSKLIKHQTDNCLGFHSGVMHLRK
ALHAYPNSSLMRNLLGYLLLSNEERDDNHTATRCCNMLYGFDQQNKGLKSAYEIHGAGAV
ACYTIGTSHPRFSFPTCSYQCQNGIGTIRQLQKCLRQDPWNYDARYLLILNILQKAREER
FPCHLRATIERLILVAFSNEPYFNKDTSHQYKKFQLLLCASEISLQGNDQIKCINYAKAA
SSISLPDNYLFYAHLLLCRAYAAENDSNNLRNEFIKCLDLKTDNYLGWVCLKFIASRYEL
HVESNSLELSFKKGSVESKDLQHMVIPVSGLVDGLISFWSQDFMAAEKYFAQACSSGHDD
GCLLLCHGVTCMELAKQLCSPHFLRLAVNSLLKAQVISVVPIPMVSITLAQAEGSLGLKE
NWESGLRFEWFSWPPDMRPAELLFQMHLLAKQSKVGPDQLRVELCQSPLRWVLRAIHVNP
SCMRYWKVLQSLWNEG
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaggagacggaatgctgtgtcgtgcctggactcagccccgccgctacagaaccc
gaagtcgagaaagcttatcacatcgaggaagaggttgcagtagaaaaagatcatgtaaga
gaatcggggaccccttgtattacatcaagacaattgcaagatacagttaacgctcatcca
gatgacccctcctcccatttcaaactcgggattttcctgtgggaaaatggcggaagccac
gataaggcggttgctgcggatcattttctgaaatcagcgaaactagaccctcagaatgct
gctgctttcaaatatctaggggattattatgccacattttctgttgacatcgaaagggct
ctcaagtgctaccagagagctgtcagtcttgatgttcatgattttcactctggagaagca
ttgtgcgatctgttgcatcgtgaaggaaaggagagtttagaggttgctatatgcaaagag
gcttcctctaagtcaactcgagccttttgggctttccggaggttgggctatttgcaggtt
tttcaaaagaagtggactgaagccgtcttaagtcttcagcatgccattcgaggatatcct
tcttgtgctgatttgtgggaagccctgggtcttgcatatcagcgacttggccggtttact
gctgcaattaagtcatatgcacgggccattgaaattgaaggagatagaattcttgcttgg
gttgagagtggaaatatcttcttgatgcttggtttgttcaaaaaaggagttgaacacttt
cagcgagctctagagatatcacctaaaagtattactgcacaatttgggctctcttcaggg
ctgcttggtttggcaaaggaatgcattaataggggggcgtttaaatgggcatcctttctg
ttagaggaagcatctaaagttgcaagaggaagtacatatttagctgggaacttgtcgtgt
atctggaagttgcttggagatattcagcatacgtatgcaaaatgctatccatggatggaa
gaggactgggggctatgtgcagaatcttttagaacttctatcctttcctggaagcagact
cgcagtttggctttattgtctgccaaatgttcctatcagcaagctctacacttggctccg
tgggaagctaacatttacacagatattgctattactttagatattatttcaactttgaat
ggtgattctggatctgaattcaattcctggcagatatctgaaaagatgacattaggggcc
ttgatgctcgagggtgacaatcatgaattttgggtggcaatgggatgcatctctaaccat
gatgcgttgaagcaacatgcttttataagagcattacagttggatggatcgctggctgga
gcctgggcttatcttgggaagctatacaggaataggggagagatgcaattggcaagacag
gcatttaattatgccagaagtatagatccatctctggcaataccctgggctggcatgtcg
gctgatttgaatattagtgagtccacatcagatgaagcatttgagagctgtttgagagct
gcatcaatactaccagtggcggaatttcaaattggacttgccaagctttctctgcaggca
ggccatctttcatctccacaggtgttcggagccatacgtcaggctgttcaacttgcacct
tgttaccctgaatcctataatctaaatggactagcttttgaggcacaattggattatcaa
tctgctgttgctgcttatcgtctagcacacctcacgactagccatttttcagatagagtt
ccaaggtctcatgtcagagatatatccatcaacttagccagatcactctgcatggtagga
aatttctttgaagcttcgcaggaatatgaaaatttgagtaaagaaggcatgctcgacatc
gaaggtctgcaggtgtatgctttctcattatggaaactaggaaagaatgaccaggccctt
agcaccgtgagaacccttgcttcttgcatctctaccatggaaaaaacacgtactgctgca
tctgttggtttcatatgcagattgttgtattcaatatctggattggattccgcaatcaac
agtatcatgaagatgccaacccattttttccggagttcaaaagtgagctttgtagtggct
gctattcatgccattgatgggtgtgatcggcttgactccattgttctaagctgccgttcc
tgcctccagtctcatgaagagataactaaaatgcacattttgattgcattttctaagctg
atcaaacatcaaacggataactgcctgggattccatagtggagtgatgcatcttagaaaa
gctcttcatgcataccccaacagtagtttgatgaggaacctgcttggttatcttttgcta
tccaacgaagaaagagatgacaatcacacagctactaggtgctgcaacatgttgtatggt
tttgaccaacagaacaaaggtctgaaatctgcatatgaaattcacggtgctggagctgtg
gcctgctatacaatcggcacgagtcatccgaggttttctttcccaacatgttcataccag
tgtcagaatgggattgggaccattcgacaacttcaaaaatgcttacgtcaagacccatgg
aattatgatgctcgatatcttcttatactaaacattctgcagaaggcacgtgaagaaaga
tttccctgtcatctacgtgcaactattgagcggctaatcttggttgccttttccaatgag
ccatattttaataaagatacatctcatcaatataaaaagtttcagctgctactttgtgca
tctgagatcagtttacaaggcaatgaccaaattaaatgcatcaactatgccaaagctgct
tcctctatttcacttccagacaattatcttttttatgcacatttgttactgtgccgagcc
tatgctgcagaaaatgattctaacaacctccgtaatgaattcataaaatgtttggattta
aagacagataactatcttggatgggtatgtcttaaattcattgcatctcgatatgagctt
catgttgaatccaatagcttagaacttagtttcaagaaaggatcagtagagagcaaggat
ctgcaacacatggtaatacccgtgtctggtctggtggatggtttgatatctttttggagc
caggattttatggcggctgagaagtattttgctcaagcttgttcctcgggacatgatgac
ggctgtctcctcctctgtcatggtgtaacctgcatggaacttgcaaagcagctttgcagt
cctcatttcttgaggctggctgtgaacagcctccttaaagctcaagtaatttccgttgtt
ccaataccaatggtctcgatcacactggctcaagcagaagggagtcttggtttgaaagaa
aattgggagtcaggccttcgttttgaatggttctcgtggccaccagatatgaggcctgcg
gagctcttgtttcaaatgcatctgcttgcaaaacagtcgaaagttggtcctgatcagttg
agggttgagttatgtcagtctcctctgagatgggttcttcgcgcaatccatgtaaaccct
tcttgtatgagatattggaaggtgctgcaaagcttgtggaatgagggctga
DBGET
integrated database retrieval system
