Cucurbita moschata (crookneck pumpkin): 111443142 Help Entry 111443142         CDS       T05248                                  Name (RefSeq) protein PAT1 homolog 1-like   KO K12617   DNA topoisomerase 2-associated protein PAT1 Organism cmos  Cucurbita moschata (crookneck pumpkin) Pathway cmos03018   RNA degradation Brite KEGG Orthology (KO) [BR:cmos00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     111443142  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:cmos03019]     111443142 Messenger RNA biogenesis [BR:cmos03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     P-body specific factors      111443142   mRNA degradation factors    5'-3' decay     Decapping complex      111443142 SSDB OrthologParalogGFIT Motif Pfam:  PAT1 Motif Other DBs NCBI-GeneID:  111443142 NCBI-ProteinID:  XP_022936577 UniProt:  A0A6J1F8U1 LinkDB All DBs Position Unknown AA seq 817 aa AA seqDB search MDVFGNGARVQVASTSGDLKRFGANSTEDALFDASQYAFFGKDVMEEVELGGLEDEEDDT LAAGIEEEEEFLFDKESEDFRPPSDIDDLVSSFERLSEVGSGPTGVIGGRALRESSSVNE WPHEEGFSNWLAQQGYNVESAQEGKRWSSHPHFSSLAESTSLYRTSSYPDQQPQLQQYHQ QISSEPISVPKSSYPPIGISPHASPNQHSSHLNMPFVPSGRHVVSLSPSNLTPPNSQIAG FISGSRFGNMPQLNSGLSANGGPQNQWVNQIGMFRGEHSSHLNNLLPQQLPNQNGFPQLP PQPLQQQQQQQQHRLQHPVQPPFGGSLPGFQSHLINSHVSSGPPHLMNKLEVMLGVPDMR DQRPRSQKGRQNPRFIHQGNETSSFRKNFGWPFCGSKYVGADELENIVRMQLAATHSNDP YVDDYYHQACLSRKSAGAKLRHHFCPNQLRDLPPHARANNEPHAFLQVEALGRVPFSSIR RPRPLLEVDPPSSSVGGSSDQKVSEKPLEQEPMLAARVTIEDGHCLLLDVDDIDRFLQFN QFQDGGTQLRRRRQVLLEGLAASLHIVDPCSKDGHTVGLAPKDDFVFLRLVSLPKGRRLL GKYLQLLVPGGELKRIVCMAIFRHLRFLFGSVPSDPGAADSVSELARIVSLQTRSMDLGA LSACLAAVVCSSEQPPLRPLGSPAGDGASLILKSVLERATELLTDPHAASNYNITHRSLW QASFDEFFGLLTKYCVNKYDSIMQSLLRQSPQNPAVAVLDQATAISQEMPVEVLRASLPH TDEHQKRVLIDFAQRSMSVGGSNNGTEHCRRNNFDSL NT seq 2454 nt NT seq  +upstreamnt  +downstreamnt atggatgttttcggtaacggtgctagagttcaagtggcatctacgtccggggatctcaag cgttttggagccaattcaacggaagatgctctgtttgatgcatcgcagtatgcatttttt gggaaggatgtcatggaggaggttgaattggggggattagaagatgaagaggatgataca cttgctgctgggattgaggaggaggaggagtttttgtttgataaggagagtgaggacttt agacctccatctgatattgacgatcttgtttcttcatttgaaaggttgagcgaggttggt agcgggcctacgggagttattggaggtagagcattgagagaaagttcgtcagttaatgag tggccacatgaggagggcttctccaattggcttgcccagcaaggctataatgtggaaagt gctcaggaaggaaaaagatggtcatcacatccacatttttcctctcttgctgaatctacg tctttatataggacatcgtcttaccctgatcagcagccgcagctgcagcaataccaccaa cagatctctagtgagccaatttctgtcccgaagtcttcatatcctcctatcggaatatct cctcatgcttcgccaaaccagcattcaagccatctaaacatgccttttgttccttctgga cgccatgtagtatcattatctccatcaaatctcacaccaccaaactctcagattgctggt ttcatttctggatcacgatttggaaatatgccgcaacttaactctggtctctccgctaac ggtggaccacaaaaccaatgggtcaaccaaattggcatgtttcgtggagaacattccagt cacctaaacaatttattgcctcaacagttaccgaatcagaacggatttccacagttacca ccacagccactgcagcagcagcagcagcagcagcagcataggttgcaacatcctgttcag cctccatttggtggttctctaccaggttttcagtcccatcttattaattcccatgtttct tcaggcccaccccacttaatgaacaaattggaagtcatgctcggcgtaccggatatgagg gatcaaaggcctaggtctcagaaaggtagacagaaccctcgttttatccatcagggtaat gagaccagtagttttaggaagaactttgggtggcctttctgtggatccaagtatgtggga gccgatgaattagagaatattgttagaatgcagcttgcagcaacacacagtaatgatcca tatgtagatgactactatcatcaggcttgtctttcaagaaaatctgcaggagcaaagttg aggcatcatttttgtcctaatcaactaagggatcttccaccacatgcccgtgccaataat gagccacatgcttttctacaggtcgaagcacttggtagggttccattctcatcgattcgt agacctcgccctcttcttgaagtggatcctccaagttcgtctgttggtggaagctctgat caaaaggtttctgagaagccccttgaacaggagcctatgctagcagctagagttacaatc gaggatggtcattgtctgcttcttgacgtagatgatattgatcgtttcctgcaattcaat cagttccaagacggcggtactcagttacgaagacgtcgccaggtcctgttggaaggactg gctgcatcacttcacatagttgatccatgcagtaaagatggtcacacagttgggctggct cctaaagatgacttcgttttcttgagattggtttctcttcccaagggacgaaggcttctc ggaaagtaccttcagctgctcgtaccgggtggtgagctcaaacgaatagtttgtatggct attttccgtcacttaagattcctgtttggtagtgttccttctgatcctggggcagcagat tctgttagtgaacttgcaagaattgtctcattgcaaacccgtagtatggatcttggagcc ctaagtgcatgtcttgcggctgtagtttgttcctcagagcaacctccacttcgccctcta gggtcccctgctggagatggggcgtccttgattttgaaatctgttctcgagagggccacg gaactcctaaccgaccctcatgctgcgagtaactacaacattactcaccgttctctctgg caggcttcgttcgatgaattttttggccttcttacaaagtattgtgtgaacaagtacgat agtatcatgcaatcactactcagacaatctccacagaatccagcagtagctgtcttggat caagccactgccatcagtcaagaaatgccagtcgaagtattacgggcaagccttccccat accgacgagcaccaaaaaagagtattgatagattttgctcaacgctcgatgtctgttggt ggatctaacaatgggaccgagcactgtcgtcgcaacaacttcgactccttatga

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