Cucurbita moschata (crookneck pumpkin): 111443375
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Entry
111443375 CDS
T05248
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111443375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmos03021
]
111443375
03036 Chromosome and associated proteins [BR:
cmos03036
]
111443375
Transcription machinery [BR:
cmos03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
111443375
Coactivators
SAGA/TFTC/STAGA complex
111443375
Chromosome and associated proteins [BR:
cmos03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
111443375
STAGA complex
111443375
TFTC complex
111443375
SAGA complex
111443375
SLIK complex
111443375
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
LisH
PALB2_WD40
WD40_like
KNTC1_N
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
111443375
NCBI-ProteinID:
XP_022936936
UniProt:
A0A6J1F8V3
LinkDB
All DBs
Position
Unknown
AA seq
674 aa
AA seq
DB search
MDEEQIANFVSAYLKKKGFKETEQAFQDELRHNKTNSSSSASSIDLDFAKRLLSFSEVEN
IPARYLEGYSKLRSWAYNSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARTFFNRFRE
DHEMLHLRDLQKLEGVLSPSHLEEMEFAHSLRQSKVNIKICQYSYEMLLQYLHKTQTTVI
LGIINERINFQVFPGQPSSISDDAELVTLSGSTQETANQINKKEVQWGLLEDSLEERLEK
AAGLLSDSEKAEVETKDGDVDENKKRTTEGGKQGASIKKVKKDKTAGAPGKTLRAEANSA
SMAPRVKPELALPIITTEVEQSILEDLRNRVQLSSVALPSVSFYTFINTHNGLNCSSISH
DGALVAGGFSDSSLKVWDMAKLGQQAGNTVLQDENDMSTSDPVTGHTSGKRSYTLFQGHS
GPVHSATFSPIGDFVLSSSADTTIRLWSTKLNASLVCYKGHNYPVWDVQFSPVGHYFASC
SHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVR
IFIGHRSMILSLAMSPDGRFMASGDEDGTIMMWDLSTGRCVTPLIGHTSCVWSLAFSCEG
SLLASGSADCTVKLWDVTSSTKPPRTDENKSGTANRLRSLKTLPTKSTPVYSLRFSRRNL
LFAAGALSKSASTA
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaacagatagcgaatttcgtgtcagcgtacttgaagaagaagggtttcaaa
gaaacggaacaagcttttcaggatgagttacgccataacaagactaattcatcctcttca
gcctcttccattgacctcgacttcgctaagcgcttgctctccttctctgaagtagagaat
attccagccagataccttgaaggatatagcaagcttaggtcctgggcttacaactcgcta
gatttgtacaagcatgaattgcttcgtgtgctatatcctgtgtttatccattgtttcatg
gatcttgtggctaaaggacatattcaagaagctcgaacctttttcaataggttccgtgaa
gaccatgaaatgttgcacctacgagatctacaaaagttggaaggcgtactatctccttct
catttggaggagatggaatttgctcattctctaaggcagagcaaagttaacataaaaata
tgccagtactcctatgagatgctacttcaatatcttcataagacccaaaccacagtgata
cttgggattatcaatgagcgtatcaacttccaagttttccctggtcagcctagctcaata
tctgatgatgctgaacttgtgacactctcgggaagcacccaggagactgccaatcagata
aataaaaaagaagtccaatgggggttacttgaagattctttagaggaacgcttggagaaa
gctgctggtttgctttcagattctgagaaggctgaggtagaaaccaaggatggtgacgtg
gatgagaataagaaaagaacaactgagggaggaaagcaaggtgcttcaattaagaaggtc
aagaaggacaagactgccggtgcacctgggaaaactctgagggctgaagctaattctgca
tctatggcgccacgagtgaagccagagcttgctttacctataattacaacagaggtggaa
caatctattcttgaagacttgagaaaccgtgtgcagttgagttctgttgctctgccatca
gtcagcttttataccttcattaatacacacaacggtttaaactgttcatcaatatctcat
gatggagctttggttgctggtggattttcagactcttctttgaaggtttgggacatggca
aagctgggacaacaagctggcaatactgttttgcaggatgaaaacgacatgtctactagt
gatccagtgacagggcatacaagtgggaagaggtcttatacattatttcaaggtcattct
gggcctgttcactctgccactttcagtcccattggggactttgttctttcatcctctgca
gacacaactattcgattgtggagcacaaaactaaatgccagtcttgtttgctacaaaggt
cacaattacccagtatgggatgttcagtttagtccggttggacattattttgctagttgt
tcacatgatcgaactgcaaggatctggtctatggacagaattcaacctctgaggatcatg
gcaggacatctatccgatgtggattgtgttcaatggcatgccaactgcaactacattgca
actgggtcgagtgacaaaacggttagattgtgggatgtccagagtggggaatgtgttcga
attttcatcggtcacaggagcatgatcctgtctttggcaatgtcacctgatggtcggttc
atggcatccggtgatgaagatggtacgattatgatgtgggacctatcaactggtcgctgt
gttacacctttgattggacacacatcatgcgtttggagccttgctttcagttgtgagggc
tctctccttgcctctggctctgccgattgcacagtgaaattatgggacgtaacttcaagc
acaaagccacctagaacagatgaaaacaaaagtggaactgccaatagacttagatccttg
aagactctaccaaccaaatcaactccagtttacagtttgcggttctctcggaggaatctc
ttatttgcagctggggctctctccaaaagtgcatcaacggcttga
DBGET
integrated database retrieval system
