Cucurbita moschata (crookneck pumpkin): 111444561
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Entry
111444561 CDS
T05248
Name
(RefSeq) endoribonuclease Dicer homolog 1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cmos03036
]
111444561
Chromosome and associated proteins [BR:
cmos03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
111444561
microRNA pathway
RISC loading complex
111444561
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
dsrm
DND1_DSRM
DEAD
Helicase_C
ResIII
Dicer_PBD
Dicer_dsRBD
SWI2_SNF2
SNF2-rel_dom
SprB
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
111444561
NCBI-ProteinID:
XP_022938349
UniProt:
A0A6J1FDU0
LinkDB
All DBs
Position
Unknown
AA seq
1992 aa
AA seq
DB search
MEDDTRTPGSFTADPTCSSGVSSFWLDACEDISCELINDFVDFHASIAPESSVDNTSVQH
NLANDFFGGIDHILDSIKNGGTLSPVTCNGDRDGTVGEDFYIENQASGVRDMLVDTSTMQ
ANGVQIEILQCNELSKDGFGDGSRICEGDESENGFKQPNGCEGLSVVETPNRNGVQKHEE
SYNVPLRDWGCDNEERSNKRPRFSNGNNERHYSNRGQCPSRDREKFVSRKRLRERDESDR
RDRGYYRRREHYGTSGRDARDRDSREREQKGYWERDKSGSNEMVFHSGMWEADRNREAMT
DNEKNQEFQGTTDRSSEETKEKIPEEHARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVL
LIKSISNDLQIQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRW
QREFETKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTP
KEKRPSVFGMTASPVNLKGVSNQIDCAIKIRNLESKLDSTVCTITDRKELEKHVPMPSEV
VVEYDKAATLWSLHEQIKQMEVEVEEAAKLSSRRSKWQLMGARDAGSREFLRHVYGVSER
TESDGAANLIQKLRAINYALGELGQWCAFKVAQSFLTALQNDERANYQLDVKFQESYLNK
VVALLQCQLSEGAVSDKDCKASNSDEDVANNISDHDEIEEGELLDSHVDSGGEHVDEIIG
AAVADGKLTPKVQSLVKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKSAS
LIGHNNSQDMRTCQMQDTISRFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAY
IQSRGRARKPGSDYILMVERGNLSHAAFLRNARNSEETLRKEAVERTDLSHLEDTSRLIS
MDTTRGTVYQVESTGAVVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEY
SCKLQLPCNAPFEELEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEEREK
VEQKDDGDPLPGTARHREFYPEGVANILQGDWILTGRDTFNGSKLLHLYMYTVRCVNIGS
SKDPFLTQVSNFAVLFGNELDAEVLSMSMDLFIARTITTKASLIFRGMCDITESQLVSLK
SFHVRLMSIVLDVDVEPTTTPWDPAKAYLFVPVVGDKSEDPVKEIDWDMVQKIIQTDVWS
NPLQRARPDVYLGTNERALGGDRREYGFGKLRHGMAFGQKYHPTYGIRGAVAQFDVVKAS
GLVPDRGGVVELQRHTDLPKGKLLMADSSMAAEDLVGRIVTAAHSGKRFYVDSICYDMTA
ENSFPRKEGYLGPLEYSSYADYYKQKYGVELVYKHQPLIRGRGVSYCKNFLSPRFEHAES
HEDESEETLDKTYYVYLPLELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKHMINY
PVPSSKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKFPRKHEGQLTRMRQQM
VSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESSFFDQDKSNSDGV
IEMDHHLDAFEDGEVEDREVESDSSSYRVLSSKTLADVVEALIGVYYVEGGKIAANHLMR
WIGIKVEFDADEVECATRPSNLPESILRSVDFDALEGALNIKFQDRGLLVEAITHASRPS
CGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHSLH
IHLRHGSSALEKQIRDFVKEVQDELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG
RDTAAVWRVFQPLLHPLVTPETLPMHPVRELQERCQQQAEGLEYKATRSGNLATVEVFID
GVQIGFAQNPQKKMAQKLAARNALAVLKDKEMDEAKEKMEDNNGKKKKNGNQTFTRQTLN
DICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAA
VLLLELLNKLYS
NT seq
5979 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgatactaggactccaggaagttttaccgccgacccaacttgttcatctggg
gtttcttctttctggctagatgcctgtgaggacatttcctgcgagctcatcaatgatttt
gtggatttccacgcgtctattgctcccgaatcctcagtcgataacacttccgttcaacac
aacctcgccaacgatttttttggtggaattgatcacattcttgatagtattaagaacggc
gggactctctctccggtaacttgcaatggcgatcgtgatggcactgttggggaggacttt
tatattgagaaccaggcatctggggttcgtgatatgctggttgatacctcaactatgcag
gcgaatggcgtacagattgaaattcttcaatgtaatgagctgagcaaggatggttttggt
gatggtagtcgtatctgcgagggcgatgaatctgagaatgggttcaagcaaccaaatgga
tgcgaagggcttagcgttgttgaaacccccaacagaaatggagttcaaaagcatgaggag
agttataatgtgccgttgagagattggggttgtgataatgaagaaagaagcaataagagg
cctcgtttcagcaatggcaacaacgaaaggcattactcaaacagggggcagtgtccatct
agggatagagaaaagtttgtctctagaaagaggttgcgtgagcgagatgagagtgataga
agggatagaggttattataggaggagagagcattatggaacgagtgggagggacgcaaga
gatagggactcgagggagcgggaacaaaagggttattgggagagggacaaatcaggctca
aatgagatggtttttcactcaggtatgtgggaagctgatcgtaacagagaagcaatgact
gataatgaaaagaatcaggaattccagggaactacagatagaagttccgaggaaactaag
gaaaaaatccccgaggaacatgctcgtcaatatcagttggatgttcttgaacaagcgaag
aagaaaaatactatagcttttcttgaaactggggctgggaagacacttattgctgttctt
ctgattaaaagtatttccaatgacttacaaatacaaaataagaagatgcttgctgtattt
ttagttcccaaagttccacttgtgtatcagcaagctgaggttattcgtgagagaactggc
tatcaagtaggtcattactgtggtgaaatgggtcaagatttttgggatgctagaaggtgg
cagcgtgagtttgaaactaaacaggttctggttatgacggcacaaatactgttgaacatt
ttgaggcatagcataataaaaatggaagcaatcaatctactgatcttggatgagtgccat
catgctgttaagaagcatccctattctctagttatgtctgaattttatcataccacacca
aaggagaagagaccatctgtatttggaatgactgcttcgcctgttaatttaaagggtgtt
tcgaaccaaatagattgtgcaattaagatccgtaaccttgaaagtaaattagactccaca
gtctgcactataacagaccgcaaggagttggaaaaacatgttccaatgccatcagaagtt
gtggtggagtatgacaaagctgccactttgtggtcccttcatgaacagataaagcaaatg
gaggtggaagttgaggaagctgcaaaattgagttctaggagaagtaaatggcaacttatg
ggagctagggatgctggttctagggaatttctgcgccatgtttatggtgtttctgagaga
actgaaagtgatggtgctgctaacctaatacagaagttgagagcgatcaattatgcactt
ggggagctgggtcagtggtgtgcttttaaggttgcgcagtcttttttgacagctttacag
aatgatgagagggctaactatcaacttgacgtcaagtttcaggagtcctatttgaacaaa
gttgttgctcttttacaatgccagctatcagaaggagctgtttctgacaaagattgcaaa
gcttcaaattcagacgaagatgttgcgaataatatatcagatcatgacgaaattgaggaa
ggagagcttcttgacagccacgttgactctggtggggagcatgtagatgagataatagga
gctgctgtggctgatggaaaattgaccccaaaggtgcaatcactcgttaaaattctgctg
aagtatcaacatactgaagatttccgtgccataatctttgttgaaagggttgtgtctgcc
ttggttcttccaaaggtctttgctgaacttccttctctaagttttgtaaaaagtgcaagc
ttgattggtcacaacaatagtcaagatatgcggacatgtcaaatgcaggacactatatcc
agattccgcgatggtcgtgtgacactattagttgctactagtgttgctgaagaaggactt
gatatccgacaatgcaatgttgtgatccgctttgaccttgcaaaaacagttttggcatat
attcagtctagaggacgagctagaaagcctggttcagattacattttaatggttgagagg
ggaaatttgtcacatgcagcttttttaagaaatgccagaaatagtgaggagaccctgcgt
aaagaagcagtggagagaactgaccttagtcatcttgaggatacttcaaggttgatttcc
atggacacaacacgaggtaccgtgtatcaagttgagtcaacaggtgccgtcgttagctta
aattctgctgttggtcttgttcatttctactgctcacagcttcctagtgacagatattcc
attcttcgacctgagtttgtgatggtgaggcatgagaaaccaggtggtccaactgagtac
tcttgcaagcttcaacttccttgtaatgcaccatttgaggaacttgaaggtccaatttgc
agctcaatgcgccttgcacaacaggctgtttgtttggctgcttgcaaaaagctccatgaa
atgggagcatttactgacatgctcttgccagacaagggaagcggagaggagagggaaaag
gttgaacagaaagatgatggagatccacttcctgggactgctaggcacagggagttctat
cctgaaggtgtagctaatattctccagggagattggatattaactgggcgagatactttc
aacggttccaaattgctccatctttatatgtacactgttcggtgtgtcaacattggctct
tctaaagatccattcttgactcaagtttccaattttgcagtactttttggcaatgagctg
gatgcagaggtgttatcgatgtcgatggatctttttattgctcgaactatcactaccaag
gcgtctcttatcttcaggggtatgtgtgatattactgagagccagttggtatccctcaag
agctttcatgtaagattaatgagcattgtgctggatgtggatgttgagcctactaccact
ccttgggatcctgccaaggcttatttatttgtccctgttgttggtgataagtctgaagat
ccagtgaaagaaattgattgggatatggttcaaaaaataattcagacagatgtctggagc
aatccccttcagcgtgctcggccagatgtctatctgggcacaaatgaacgagcattaggt
ggtgacagaagggaatatggatttggaaaactccgtcatggtatggcatttggacagaaa
tatcatcccacctatggtattagaggagcagtggctcagtttgatgttgtgaaggcttct
ggtttggtacctgaccgaggaggggttgttgaactgcaaaggcacacagatctacctaaa
ggcaaacttttgatggctgattcttctatggctgcagaagatttggtagggaggattgta
acagctgcgcactcggggaaaaggttttatgtggactccatttgctatgatatgactgca
gagaattcctttcctaggaaggaagggtatctaggtcccctggaatacagctcatatgcc
gattattacaagcaaaagtatggagttgaactggtatataagcatcagcctttaataagg
ggacgcggtgtctcatattgcaagaatttcctgtctcctcggttcgaacatgcagaaagt
catgaagatgaatctgaagaaactcttgacaaaacatactacgtttacctccccctggag
ctctgtctggtacatccactgcctgggtcacttgttcgtggtgcacagagattaccgtct
attatgaggagagttgaaagcatgctgcttgctattcagttaaaacatatgataaactac
cctgttccttcctctaagatattggaagctttgactgctgcctcatgccaggagacgttc
tgctatgaaagagcagaactgcttggagatgcttatctaaaatgggtggttagtcggttc
ctttttctaaaattccccagaaaacacgagggccagcttactagaatgaggcaacaaatg
gtcagtaacatggtcttgtatcaatacgcattgagcaaaggactccagtcttatatacaa
gcagatcgttttgctccatctcgatgggctgctcctggtgtgcttcctgtctttgatgaa
gatacgaaggatggagaatcatccttctttgatcaggataaatcaaattctgatggtgtt
attgagatggaccaccatcttgatgcttttgaggacggtgaggtggaggatagagaggta
gaaagtgactctagttcttatagagtcctctctagcaaaactcttgctgatgtagtcgaa
gctctcattggagtttattatgttgaagggggaaaaattgctgctaaccaccttatgaga
tggatagggattaaggtcgaatttgatgcagatgaggtcgagtgtgcaacaagaccatct
aatcttccagagagcattcttcgaagtgttgattttgatgctttagagggtgccttgaac
atcaagtttcaagaccgtggtttgctggtagaggctataactcatgcttcccgaccatct
tgtggagtttcatgttatcagcggttggaatttgttggtgacgcagtattagatcatctg
atcactaggcacttgttctttacatacacggatctacccccaggtcgtttaactgacttg
cgcgctgctgctgtaaacaatgaaaattttgcacgagttgctgttaaacatagtctccat
attcatcttaggcacgggtcaagtgctcttgaaaagcagattagggacttcgtgaaggaa
gttcaagatgaattatcaaaacctggttttaactcctttggcttgggagactgtaaagct
ccgaaagttcttggtgatattgtggaatccattgctggtgctatttttctcgatagtgga
cgtgacactgccgctgtctggagggtatttcaaccactgttgcatccattggttacaccc
gagacacttccgatgcatcctgtccgtgagctgcaagaacgatgccaacaacaggcagaa
ggtctggagtacaaagcaactcgcagtgggaatttggccactgtcgaagttttcattgat
ggggtccagattggatttgctcagaatccacagaagaagatggcacagaaactagctgcg
aggaatgcgcttgctgttttgaaggataaggaaatggatgaagccaaggaaaagatggaa
gacaacaacgggaagaagaagaagaatggcaatcaaacgtttaccagacaaaccttaaat
gatatttgtctgcgtagaaattggccgatgccattttacaggtgtgtgaatgagggtggc
cctgcacatgcaaagaggtttacctttgcggttcgggtaaatactacagacaggggatgg
acagatgaatgcgtgggagagcctatgcctagtgtcaaaaaggccaaggactctgctgct
gttctgttgctggagctattgaataaattatactcgtga
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integrated database retrieval system
