Cucurbita moschata (crookneck pumpkin): 111444853
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Entry
111444853 CDS
T05248
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111444853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111444853
Enzymes [BR:
cmos01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
111444853
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111444853
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111444853
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
MINAR1_C
Motif
Other DBs
NCBI-GeneID:
111444853
NCBI-ProteinID:
XP_022938709
UniProt:
A0A6J1FEV7
LinkDB
All DBs
Position
Unknown
AA seq
601 aa
AA seq
DB search
MLNVVRVHLPSDIPIVGCELTPYVLHRRPDKNISTDDVSESAALGGQFLRYRWYRLQSDK
KVAVCSVHPSEQATLQCLGCVKAKIPAFKSYHCTTKCFSDSWQHHRVLHDRAASAMNENS
NEEEELFGRHNNNNNAAPGAINPSSSSMLNGSTTLYPAAVTQKTGVETWLEVGRCKSYTP
TAEDIGHVLKFECAVVDVETMLSVASPLTVSTSRVIPAPSPTPRHLIPVNGVDMMGKMDL
DGRVPSSGTFTVLSYNILADVYATSETFSYCPSWALSWPYRRQNLLREIVGYRADIICLQ
EVQSDHFLEFFAPELDKHGYQALYKRKTNEVYNGNIQTIDGCATFFRRDRFAHVKKYEVE
FNKAAQSLTDPATILTAQKRNALNRLIKDDVALIVVLESKFSTPTVDNPGKRQLVCVANT
HINGNQDLKDVKLWQVHTLLKGLEKIAVSADIPMLVCGDFNSVPGSAPHHLLARGKVEPT
HPDLAVDSLNLCQPHSKLSHQLPLVSAYSYFAIKGVGNGSDKQRKRLDPTTNEPLFTNCT
RDFIGTLDYIFYTADTLTVESLLELLDEESLRKDTALPSPIWSSDHTALLAEFRCKSRSR
R
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgctgaacgtggtacgcgtgcatctgccctctgatattcctattgtaggttgcgaactc
acgccctacgtgctccatcgacggcctgataagaacattagcactgatgatgtttctgag
tccgctgcacttggcggtcaattcctgagatacagatggtatcgcttacaaagtgataaa
aaagttgctgtttgtagtgtacatccttctgagcaagccactttacaatgtttaggttgc
gttaaagccaaaattcctgcttttaaaagttatcattgcaccaccaaatgcttttctgat
tcttggcagcatcatcgtgttctacatgaccgtgctgctagtgctatgaatgaaaatagt
aatgaagaggaagagttatttggacgtcataacaataataataatgcagcacctggtgcc
atcaaccccagctcttctagcatgctcaatggttcaacaacattgtaccctgcagctgtt
acccaaaagactggtgtggaaacttggttagaagttggacgctgtaagagttacacacca
acggctgaagatattggccacgttcttaagtttgaatgtgctgtggttgatgtggaaacc
atgttatctgtggcatctccacttactgtctcaacttctcgggtcattccagctccatct
cctactccacgtcacttaatacctgttaatggggttgatatgatgggaaagatggatttg
gatggtcgagtaccatcatcaggaacttttacagtgctttcctacaatattttggctgat
gtttatgccacaagtgaaacattcagttattgcccttcatgggctctttcatggccatat
cggcgacaaaatctgcttcgggaaatagttggctatcgtgcagatataatttgtcttcag
gaggttcagagcgatcactttctggaattttttgctcctgaacttgacaaacatggttat
caagcactttacaagagaaaaaccaatgaggtctacaatgggaacattcaaacaattgat
ggctgtgcaacattttttcgtagagatagatttgcacatgtcaaaaaatatgaggttgag
tttaacaaagctgcacaatctttgactgacccagctactattttaactgctcaaaagaga
aatgctttaaacagattaatcaaggatgatgttgcactcatcgtagttcttgaatcaaaa
ttcagcactccaacggttgataatcccggaaaaaggcagcttgtttgcgtggctaatacg
catattaatgggaatcaagatttaaaagatgtcaaactctggcaggtgcatactttattg
aaaggactggagaaaatagctgttagtgcagatattccaatgttggtctgtggggatttt
aattctgttcctggaagtgccccacatcatctccttgctagggggaaggtggaaccaaca
catccagatttagctgtagattctctaaatctatgtcagccacatagcaaattgtcacat
caactacctttggttagtgcatactcctactttgcaataaagggagttggtaacggttca
gataagcagaggaaaaggctggatcctacaacaaatgaacccttatttacgaattgtact
agagattttattggaaccctggactacattttctacacagcggacactttaacagtggag
tctttgttagagctcctggatgaggagagcttgaggaaagatacagcacttccatcccca
atatggtcctccgatcacacagcactccttgccgagtttcggtgcaaatctcggtctaga
cgttaa
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