Cucurbita moschata (crookneck pumpkin): 111444859
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Entry
111444859 CDS
T05248
Name
(RefSeq) THO complex subunit 2-like isoform X1
KO
K12879
THO complex subunit 2
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03013
Nucleocytoplasmic transport
cmos03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111444859
09122 Translation
03013 Nucleocytoplasmic transport
111444859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111444859
03041 Spliceosome [BR:
cmos03041
]
111444859
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
111444859
Spliceosome [BR:
cmos03041
]
Complex C
Other components
EJC/TREX
111444859
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111444859
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
ABPF_N
LIM_bind
Motif
Other DBs
NCBI-GeneID:
111444859
NCBI-ProteinID:
XP_022938714
UniProt:
A0A6J1FEW8
LinkDB
All DBs
Position
Unknown
AA seq
1891 aa
AA seq
DB search
MALPPVECIYVVESNLREWKSGNSSFRVPQPVPVLRFLYELCWTMVRGELPFPKCKAALD
SVEFSDQMSAEELGSTFADVITQLAQDITLAGEYRARLLKLAKWLVESAFVPLRLFQERC
EEEFLWEAEMIKIKAQELKNKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRVTDAP
NNNFSGSTIGIIKSLIGHFDLDPNRVFDIVLECFELQPENSVFVELIPIFPKYHASQILG
FKFQYYQRIEVNSPVPFGLYKLTALLVKEKFIVLDSIYAHLLPKEDEAFEHYDSFSSKRL
DEANRIGKINLAATGKDLMDDEKQGDVSIDLFSALDMESEAVNERSPELENNQTLGLLTG
FLSVGDWYHAHILFDRLSPLNPVEHLPICNSLFRLIEESISSAYSIVRQNPYQSLGAYSG
TSIDTIGTTSLPVGGTFIDLPRELFQMLAAAGPYLYRDTILLQKVCRVLRGYYMSAIEFV
NSMESGLNPEFGILAGNRAPHLHLKEARLKIEEALGTCLLPSLQLIPANPAVGQGIWEVM
NLLPYEVRYRLYGEWEKDDEKIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAH
ANPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLAQGGRDKLKDDGL
NLSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELVQQMANVQYT
ENLTEEQLDAMAGSETLRFQATSFGVTRNNKALIKSSNRLRDSLLPKDEPKLAVPLLLLI
AQHRSVVVINADAPYIKMVSEQFDRCHGTLLQYVEFLCSAVTPASAYAQLIPSLNELAHL
YHLDPEVAFLIYRPIMRLFKCQGGSDIFWPLDGNDATVAGNNSDLEPAECSADVVLDLGS
SQKLVRWSDLLDTVKSMLPPKAWNSLSPDLFTTFWGLTLYDLYVPRSRYETEIAKQHSAL
KALEELSDNSSSAINKRKKDKERIQESLDRLSNELVKHEENVASVRRRLSREKDKWLSSC
PDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQP
MICCCTEYEAGRLGRFLYETLKIAYHWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQ
FIKVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISNVFPVTRKSGINLEKRVAKIK
SDEREDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKTAPSLASKSSASNLAASQNNS
IYPSQNEPGGGKTAAIAIPNSDSLNIGKDHSLRSRSSDVRMDKIDGSSVPKSELEHGKMK
GTSLNGPDSQPLVPSTSVHSGSLRMVESLKPGDDLSRTLDEGSSKVISKTSSESELRVSA
KRSAPAGSLNKAPKQDITKDEIRTGKAASKNPGSSTSERELPNHSIDGGRHGGSSNVPSS
VMPNGNTQGSLTKGSSLSVKALDGHTIESKAESGVGRTSDSRASSAKDDGTEALEVARSS
SSRLAHSPRHDNSTSGSRSSDKLQKRASPAEEPDRQGKRRKGDGETRDVDGDFCISDKDR
SMDPRSVDADKLGTDEQGGYRGSDKPLDRTKDKVNERYDREYRDRVERPEKSRGDDPSVE
RTRDRSIERYGRERSVEKVERVSDRYPEKSKDERNKDDRSKLRYTDSTIEKSHVDDRFHG
QSLPPPPPLPLHMVPQSVNSGRREEDADRRFGTTRHTRRLSPRHEEKERRRSEENLISQD
DAKRRREEEFRERKREERELGMSLKADDRDREREREKANLLKEDMDGSATSKRRKLKREH
LSLAEAGEYSPVGPPPPPISVGASQSYDGRERGDRKGVMMQRAGYLDDPGLRIHGKEVVN
KMTRREADLMYDREWDDEKRMRADQKRRHRK
NT seq
5676 nt
NT seq
+upstream
nt +downstream
nt
atggctctccctccggttgagtgtatatatgttgtagaaagcaatcttcgagaatggaag
tccggaaattcgagctttagggttcctcaacctgtccctgtgcttcgattcctttacgag
ctctgctggaccatggtccgaggtgaattgccattccccaagtgtaaagcagcattggat
tcagttgagttctcggatcaaatgtctgcggaggagttaggatcaacttttgctgatgtc
attacccaattggcccaagatatcacattagcaggagagtatcgtgctcgtctcttaaaa
ttggctaagtggcttgttgaatcagcatttgtcccattgcggctttttcaggagcggtgt
gaggaagaatttctatgggaggctgaaatgataaagattaaggcgcaagaattaaaaaat
aaagaggtcagagtaaatactcgtcttctatatcagcaaacgaagtttaatcttctgcgg
gaagaaagtgagggttatgccaagttggtaacacttctttgtcgggtcactgacgctcca
aataataatttttcgggatcgacaattgggattataaagtcattgatcgggcattttgat
ctggacccaaaccgtgtttttgacattgtcttggagtgttttgaacttcagccagaaaat
agtgttttcgtggagctaattccaatatttcccaagtatcatgcttcacaaatccttggg
ttcaaatttcaatattatcagcgtattgaagtaaattcgccagtgccatttgggctttat
aagcttacagcgttactagtgaaggaaaaatttattgttcttgatagcatatatgcacat
ctgctcccgaaggaggatgaggcatttgaacattatgattccttttcttccaaaagactt
gatgaggctaacagaataggaaaaataaatcttgcggcaactggaaaggacctgatggat
gacgagaagcaaggagatgtaagcatcgatcttttttctgctcttgatatggaaagtgag
gcagtcaatgaaaggtctccagagctggaaaacaatcaaacattgggcttgcttactgga
tttctttctgtgggtgactggtatcatgcacacatactgtttgatcggctttcacctctc
aatcctgtggagcatcttccaatttgtaacagcttgtttaggctcattgaagaatcaatc
tcctctgcatattctattgtccgtcaaaatccttatcagagcttgggggcatactcagga
actagtattgatactataggcactacaagtttgccggtgggtggtacttttatagatctt
ccaagggaattattccagatgcttgccgctgctggaccttatctctatcgtgatacaatt
ctgctacagaaggtttgtagagtgcttagaggctattatatgtcggcaattgagtttgtc
aacagtatggaaagtggtctgaatcctgaatttggcatcctagctggaaaccgggctcct
catcttcacttaaaggaagcaaggttgaagattgaggaagccttaggaacgtgcctactt
ccttctttacagttgatacctgccaatccagctgttggtcaaggaatatgggaagtaatg
aatcttcttccatatgaggtgcgatatcgtttatatggtgaatgggagaaagatgatgag
aagattccaatggttttggctgcaaggcagacggctaagttggacacacgaaggattttg
aagcggttggctaaagaaaatttgaagcaattgggtaggatggttgcaaaacttgctcat
gcgaatccaatgactgtccttcgtacaatagtacaccagatcgaggcatatagggatatg
attactcctgtagtagatgcattcaagtatctgactcagcttgagtatgacatattggaa
tatgttgtgattgaacgtttggcacaaggagggcgtgataagttgaaggatgacggcctt
aatctctcagattggctccaatcattagcttcattttggggtcacctgtgtaaaaagtac
ccatctatggaactaaggggtttgtttcagtatcttgtcaatcagttaaaaaaaggccaa
ggaattgagcttgttctcctgcaggagcttgttcaacaaatggctaatgtccaatacaca
gaaaacctgactgaggaacagttggatgctatggcaggaagtgagaccctacgttttcag
gcaacttcttttggagttacacgaaataacaaggcgttgatcaagtcgagcaacagactg
cgtgactcgttgcttcctaaggatgaaccaaaattggcggtcccccttttgctacttatt
gctcaacaccgttcagtggttgttataaatgcagatgctccttacataaagatggtcagc
gagcagtttgatagatgtcatggaactctgcttcaatatgtggaatttctttgtagtgca
gttacgccagcatctgcttatgctcagttgattccctcactcaatgaacttgcccatctt
tatcacctagatcccgaggttgctttcctgatatatcggccaataatgagactatttaag
tgtcaaggtggttctgatatcttctggccactggatggtaatgatgcaactgttgctggc
aataattctgatctggaacctgcagaatgttctgctgatgtcgttttggatcttggttct
tcacagaaacttgtgaggtggtcagatctgctcgatactgtaaagtctatgttgcctcca
aaagcttggaatagcttgtctccagatctctttactacattttggggtctcaccctctat
gatctttatgttcctcggagtagatatgaaactgaaattgctaagcagcattctgctctt
aaagctttagaagagctttctgataactcaagttctgcaatcaataaaaggaagaaagac
aaagaaagaattcaagaatctcttgatcgcctgtccaatgaacttgttaagcatgaagaa
aatgttgcatcagttcgtagacgactttctcgtgaaaaggataaatggttgagctcctgt
cctgatactttgaaaattaacatggagttccttcagcgttgtatttttccccgctgtaca
ttcagcatgcctgacgctgtctactgtgctatgtttgtgcacactcttcattcccttgga
acaccatttttcaatacagtcaaccatattgatgttttgatatgtaaaaccttgcaaccc
atgatatgctgctgtacggaatatgaagcaggcaggcttgggaggtttttatatgagaca
ctaaagatagcttatcattggaagagtgatgaatccatttatgaacgtgaatgtggaaat
atgcctggatttgctgtctattataggtatccaaacagccaaagagtaacgtacggccag
ttcatcaaggttcattggaagtggagccaaagaattacacggttattgatacaatgcttg
gaatctacagagtacatggaaattagaaatgctcttataatgttgacaaaaatatccaat
gtgtttcccgtcactagaaagagtgggatcaaccttgagaaacgggttgctaagatcaaa
agcgatgaaagagaagatctgaaggtgttagcgactggcgttgctgcagccttggctgct
agaaagccttcatgggttacggatgaagagtttggcatgggttaccttgaattaaagact
gcaccatctcttgcatcaaagtcttcggccagtaatttagctgctagccaaaataattcc
atttatccttcccaaaatgaacctggtggagggaagactgctgcaatagccatcccaaat
tcagattctttaaatataggaaaagaccattcattgaggtcaagaagttctgatgtgaga
atggataaaatagatggttcttctgttccaaaatctgaactcgagcatgggaaaatgaaa
ggcacgtcattgaacgggccagattcccagccactggtgccctcaacttctgtacattca
ggatcgttaagaatggtggaaagtctgaaacctggtgatgatttaagtaggactttggat
gagggctcatcaaaagttatttcaaagacctcgtctgaatccgagttgagagtttcagcg
aaacgatcagcacctgctggatctcttaataaagcaccaaaacaagatatcacaaaagat
gagattagaacaggaaaagctgctagcaagaaccctgggtcttccacaagtgaaagggag
cttccaaatcattcaatagacggtggtaggcatggaggttcttccaatgtaccttcttca
gttatgccaaacggtaatacacaaggttcgttaactaaaggctcgtccttatcagtaaaa
gctttagatggtcatactattgaatcaaaggcagagagtggggttgggaggacttccgat
agtagggcttcatcagcaaaggatgatggcactgaagctcttgaagttgcaaggtcctct
tcttccagacttgctcattcacccaggcatgataattcgaccagtggttctagatctagt
gataagctgcagaaaagagctagtcctgcagaagaacccgacagacaaggtaaacgccgg
aaaggagatggtgaaactagagatgtagatggggatttttgcatctctgacaaagataga
tctatggatccacgttctgtagatgctgataaactaggaacggatgaacaaggtggttac
agaggttcagacaagcctttggataggacaaaagataaagtaaatgaaaggtatgatagg
gaatacagagaccgggtagagcgccctgaaaagtcccgtggagatgatccatcagtagaa
agaacaagagatagatcaatagaaagatatggaagagaacgctctgttgaaaaagtggag
agagtttctgataggtatcctgaaaagtctaaggatgaaagaaataaagatgataggagc
aaattacgatatactgattcaactatagagaagtctcatgttgatgatcggttccacgga
cagagcttgccacctccgccgcccttgcctctacacatggtccctcaatctgttaatagt
gggagaagagaagaagatgcagataggaggtttggaactactagacacactcgaaggctt
tctcctagacacgaagagaaggaacgaagacgatcagaggaaaatttaatttcacaggat
gatgcaaaacgcagaagagaagaggaatttcgagaaagaaagagagaagagagagagttg
gggatgtcattgaaggcggatgacagggatagggagagggagagggaaaaggcaaacctt
ttgaaggaggacatggacggttctgccacctccaagaggcgaaaacttaaaagggagcat
ctgtcattagctgaggccggtgagtattctcctgttggcccaccacctcctccgataagt
gttggtgcgtctcaatcttatgatggacgagaaagaggagaccggaagggagtaatgatg
cagcgtgccggttacctggatgacccaggcttgagaattcacggtaaagaagtggtcaac
aagatgactagacgtgaagctgatctaatgtacgaccgagaatgggacgatgagaaaaga
atgagagcagatcagaagcggaggcatcggaaataa
DBGET
integrated database retrieval system
