Cucurbita moschata (crookneck pumpkin): 111445002
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Entry
111445002 CDS
T05248
Name
(RefSeq) flowering time control protein FY-like isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111445002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111445002
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111445002
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
Beta-prop_WDR5
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
EIF3I
Beta-prop_EML_2
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_Aladin
Beta-prop_WDR41
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_1st
eIF2A
Beta-prop_SPT8
Beta-prop_SCAP
Beta-prop_WDR75_1st
NBCH_WD40
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_HPS5
Tricorn_2nd
WD40_like
WD_LRWD1
PROPPIN
WDR54
Motif
Other DBs
NCBI-GeneID:
111445002
NCBI-ProteinID:
XP_022938942
UniProt:
A0A6J1FFG6
LinkDB
All DBs
Position
Unknown
AA seq
730 aa
AA seq
DB search
MYGDPQQFQQQQHQQQQPNQHPLGGDFPRGPPPSGPPMMRQPSASSTTLAPEFQQHHHPR
HPSGPPPPYEAHGDSFGAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSKDRTVLQSTPA
ASIDMLPPAAYSDNPSTSFAAKFVHTSINKNRCSINRVLWTPTGRRLITGSQSGEFTLWN
GQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVR
DLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLSGHGWDVKSVDWHPTKSLLVSGGKDN
LVKLWDAKSGKELCSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG
HRKDVTALAWHPFHEEYFVSGSFDGSIFHWLVGHETPQIEISNAHDNSVWDLAWHPIGYL
LCSGSNDHTTKFWCRNRPGDTARDKFSTGYNEQNPAGSARMTGNFVVPDGPTTPGPFPPG
LARNEGTIPGIGVAMPLSDTAAMGEHKQPHQISMPVGAPPLPPGPHPSLLAANQQHSFQQ
NPQQFMQQQQQQQLQHHQNQQMAPGPMQPQNLPHLQPPSHFPLLPHPNLPRPPQMPSLNM
PSQPGSLPSPGPASVQMPMPGPMGMQGSMNQMGPPMQQNHFMGMNPMHSGSMPTSGAPPS
VQGFQNSLPNMQGPSNASGAPMYPQGGAFNRTQAGQMPMTPGFNPYQFGGQPGMPPPQQS
GPPPHGQTPQ
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgtacggtgatccccagcagtttcagcagcagcagcatcaacagcagcagccgaatcag
catcctcttggtggggatttcccaagaggcccgcccccgtcagggccacccatgatgagg
cagccgtctgcctcttcgactacactcgctccggagtttcaacagcaccatcatcctcga
cacccatctggccctcctcctccttacgaagcccatggggatagttttggtgcaaaaaga
atgaggaagcttactcaaaggagagcagtcgattatactagtactgtcgtgcgctatatg
cagatccgtatgtggcaacgagattcaaaggataggactgtgttgcaatcaactccagca
gcatcgattgatatgttgccaccagctgcctattcagataatccatctacaagctttgcc
gctaaatttgtccatacatcaatcaacaaaaatcgttgttccatcaatagagtgttgtgg
actcctacagggagacgtctgattacaggctcacaaagtggtgaatttaccctttggaat
ggacagtcgttcaattttgaaatgattcttcaggctcatgatcaagcaattaggtctatg
gtatggagtcacaatgacaactggatggtctctggtgatgatgggggctcaataaagtat
tggcaaaataacatgaataatgtgaaggcgaataaatcagctcataaagaatcagttcgg
gacttgagcttctgtagaaccgatttaaaattctgttcctgttctgatgatactactgtc
aaagtttgggacttcgctcggtgtcaagaagagcgttctttgtctggccatgggtgggat
gtgaaaagtgttgattggcaccccacgaagtctctactagtttcaggtggcaaagacaac
ctcgtaaaactttgggatgcaaaatccgggaaagagctttgctcatttcatggtcataaa
aatacagtactatgtgttaagtggaatcaaaatggtaactgggtgctgactgcttcaaag
gatcaaatcatcaagctttatgacataagagctatgaaagaactcgagtcgttccgcggg
catagaaaggatgtgactgcattggcctggcaccctttccatgaagagtattttgttagt
gggagttttgatggctctatttttcattggcttgttggacatgaaactcctcagattgaa
atttccaatgcacacgataatagtgtttgggaccttgcatggcatcctattggttatctt
ctttgcagtggtagcaacgatcacacaaccaaattttggtgtagaaataggccaggcgac
accgctcgtgataagtttagcacaggttacaatgagcaaaatcccgctggctctgctcgt
atgactggtaacttcgtggtacctgatggacctactactcctggaccatttccgcctggg
ctggctcgaaacgagggaaccattcctggcattggagttgccatgcccttatctgatact
gctgcaatgggagaacataagcagccacatcaaatttcaatgccagtaggggctcctccc
ctcccacctggtccacacccttctcttcttgctgccaatcagcagcattcttttcaacag
aaccctcagcagttcatgcaacagcagcagcagcagcaattacaacaccaccagaaccaa
caaatggccccagggcccatgcaacctcaaaatttgccacacttacagccaccgtcgcat
ttccctttgctcccacacccaaatttacctcgaccgccccaaatgccctcgctgaatatg
ccttcacaacctggatcattgccttcaccaggacctgcctcggtacaaatgcctatgcct
ggtccaatggggatgcaaggatctatgaatcagatgggtcctcctatgcaacaaaaccat
tttatgggcatgaatccaatgcactctggatctatgcctaccagtggtgctccaccttct
gttcaaggttttcagaatagtttgccaaatatgcaaggcccatcaaatgcgtctggggca
ccgatgtatccacagggcggtgcattcaatcggacacaggccgggcaaatgccaatgacg
ccagggttcaacccgtaccagttcggcggtcaacccgggatgccaccaccgcaacaatca
ggtcccccgcctcatggccagacgcctcagtag
DBGET
integrated database retrieval system
