Cucurbita moschata (crookneck pumpkin): 111445073
Help
Entry
111445073 CDS
T05248
Name
(RefSeq) regulator of nonsense transcripts UPF2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03013
Nucleocytoplasmic transport
cmos03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111445073
03015 mRNA surveillance pathway
111445073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111445073
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111445073
mRNA cycle factors
P-body specific factors
111445073
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
111445073
NCBI-ProteinID:
XP_022939061
UniProt:
A0A6J1FEV2
LinkDB
All DBs
Position
Unknown
AA seq
1191 aa
AA seq
DB search
MDHHEDDGRPVSESQPKRDDEETAARQEEIKKSFEAKMALRQSNLNPERPDSGFLRTLDS
SIKRNTTIIKKLKQINDEQREGLMDELRNVNMSKFVSEAVSAICDAKLRASDIQAAVQIC
SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGVVED
SAIFNNIIKDLTSIEHLRDRDTTLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT
ADQKKFFRKAFHTYYDAAAELLQSEHTSLRQMEQENAKLLNAKGELNDENVSSYEKLRKS
YDHLYRNVSSLAEAVDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA
FYECLPDLRAFVPAVLLGEAEPKANEQSAKPAENLAESEADQGQQTSLEAVEISTDSLLQ
DGKINEKGKDKEEKDKEKNKDTDKEKGKEKDADRKMENEKEKLKNIEGTNLDALLQRLPG
CVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRLVATLSTCMKDVSV
ILLQMLEEEFNFLLNKKDQMNIETKIKNIRFIGELCKFKIASAGLVFSCLKACLDDFTHH
NIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPP
ERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVHKGK
YGHIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGELYN
YELVDSSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSSKRK
LDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHERSV
SNVKPNIEKHLDAKKPSRATSNTTSANGRDTMNGSKENGAAHEDGVDSDSDTGSGTIEAE
GHDDEESDLENHEDGCDTEDDEDDEEAGGPASDEDDEVHVRPKVAEVDPREEANFEQELR
AVMQESMDQRRQELRGRPTLNMMIPMNLFEGSTRDHHGRGAGGESGDEALEEDAGGSKEV
QVKVLVKRGNKQQTKKMYIPRDSALLQSTKQKEAEELEEKQDIKRLILEYNDREEEELNG
LGSQTMNWMQTGNNRAPTRGNNWDASGGRSGGSHHPHHRYPGGGMHYSRKK
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggaccatcatgaagatgatggccgcccagtgagtgaaagtcagcccaagagggatgat
gaggaaactgctgctcgccaggaagaaattaaaaagtcatttgaggctaaaatggctcta
cgacaaagtaatctgaatccagagaggcctgactccggattccttagaacgttggattct
agtattaaacgcaacacaactattattaaaaagttaaagcagataaatgacgaacaacga
gaagggctgatggacgagttgcgtaatgtaaatatgagtaaatttgttagtgaggctgtt
tctgctatatgtgatgccaagcttagagcttctgatattcaagcagctgttcagatctgt
tcgcttcttcaccaaaggtacaaagacttctcaccgtgcctgattcaagggcttttaaaa
gtattctttcctggaaagtctggggacgagttggatgctgataggaacttgaaggccatg
aagaagcgcagcactctcaaacttctcttggaacttttttttgttggagttgtagaagac
agtgcaattttcaataatattattaaggatcttacaagtatcgaacatttgagggatcgg
gatactaccctaacaaacttgactctacttgctagctttgctcggcaagggagaatcctc
ttgggtctaccgcctactggacaagatcatgaggagttttttaagagcctcaatattact
gccgaccaaaagaaattcttcaggaaggcatttcatacatattatgatgcagcagcagaa
ttgcttcagtctgaacatacatcacttcgccaaatggagcaggaaaatgctaagctcttg
aatgcaaaaggagagcttaatgatgaaaatgtctcttcatatgagaagttacgaaaatct
tatgaccacttatatagaaatgtctcatccttagcagaagcagttgatatgcaaccccca
gtgatgccagaggatggccacacaaccagggtttctgcaggtgaagatgtttcatcacct
gctgctggaaaagattcatctgtgcttgaagccatttgggatgatgaagacacccgggct
ttctatgaatgcttaccagatctcagggcatttgttccagcagtactattgggagaagcg
gagcctaaagcaaatgagcaatctgctaaaccagcagaaaatctggctgaatctgaagca
gaccaaggtcagcagacttctctagaggccgttgagatttctacagattctttgctacag
gatggaaaaattaatgaaaaagggaaggacaaagaagaaaaagataaagaaaagaataag
gatacagacaaggagaaggggaaagaaaaggacgcagatagaaagatggaaaatgaaaaa
gaaaaacttaaaaatattgaaggaactaatttggatgctttgttgcagaggctccctggc
tgtgtcagccgtgaccttattgatcagttgactgtagagttttgttatttgaattccaag
gctaaccgaaagaagcttgttcgagctttgtttaatgtacctaggacgtctttggagtta
ctgccttactactcacgcttggtcgcgacattgtcaacttgtatgaaggatgtatctgtc
attctcctccagatgttagaggaggagttcaactttttattgaacaaaaaggaccaaatg
aacattgaaacgaagataaaaaatattaggtttattggagagctctgcaagttcaaaatt
gcttcagctggccttgtttttagctgtttgaaggcatgtttagatgatttcactcaccac
aacattgatgttgcttgtaatcttcttgagacctgtggacgttttctttatcggtctcct
gaaactacagttcggatggctaacatgttggagatattgatgcgcttgaaaaatgtaaaa
aatttggatccccggcatagcaccctggtagaaaatgcatactatctttgcaagcctcca
gagagatctgcacgggtgtcaaaagttcgtccaccattgcatcagtatattagaaagtta
ctcttctcagatctggacaagtctgccattgagaatgtgttaaggcaacttcggaaactt
ccatggagcgaatgtgagcaataccttttaaaatgttttatgaaagttcacaaagggaag
tatggccatattcacttgattgcttctctaacgtctggtttgagtcgataccatgacgag
ttctcagttgctgttgttgacgaggtattggaagaaattaggcttggactcgaagtaaat
gattatgggatgcagcaaaagcgcattgcccatatgcggtttttgggggagttgtacaac
tatgaacttgtagattcatctgttgtttttgataccctttatttgattcttgtctttggg
catggcacatcagagcaagatgtattagatccaccggaggacactttccgcataaggatg
attatcactcttcttcaaacctgtggtcactactttgatcgaggatcttccaagaggaaa
cttgatcgattttttatacacttccagaaatatattctcagcaaaggcgcgcttccgttg
gacgttgagtttgacttacaggatttatttgcggaattgcaaccaaacatgaccagatac
tcatccattgaagagataaatgctgctttcgtagaactcgacgagcatgaacgttctgtc
tcgaatgtcaagcccaatattgagaaacacctcgatgccaaaaagcctagcagagcaact
tccaataccacctcagctaatggaagggacacgatgaatggctccaaggaaaatggtgca
gctcatgaagacggtgttgatagcgacagtgatacaggaagtggcactattgaggcagag
ggacacgatgatgaagagtcggacttggagaatcatgaagatggatgtgacactgaggat
gacgaagacgatgaagaagcgggtgggcctgcttctgatgaggacgatgaggttcacgtg
aggccaaaagtggctgaggtagaccccagagaagaagccaatttcgagcaggagctcagg
gctgtcatgcaggagagtatggaccagcgcaggcaagagctacgtggccgaccaacattg
aatatgatgataccaatgaatttattcgagggatcgacaagggaccaccatggaaggggg
gctgggggagaaagtggggatgaggcattggaagaggatgctgggggaagcaaggaggtt
caggtgaaagttcttgtgaagcgtgggaacaagcagcaaaccaagaagatgtatatccct
cgtgatagtgcacttttacagagcactaaacagaaagaagcagaggagctagaagagaag
caagatattaagaggttaatcttggagtacaatgaccgtgaagaggaagaacttaatgga
ttaggctcccaaacaatgaattggatgcaaacagggaacaatagagcccctactcggggc
aacaactgggacgcctccggcgggaggagcggtgggtcgcatcatccccatcatcggtat
cccggcggtggcatgcattatagtcgaaagaagtga
DBGET
integrated database retrieval system
