Cucurbita moschata (crookneck pumpkin): 111445620
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Entry
111445620 CDS
T05248
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03040
Spliceosome
cmos04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111445620
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
111445620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmos03041
]
111445620
04121 Ubiquitin system [BR:
cmos04121
]
111445620
03400 DNA repair and recombination proteins [BR:
cmos03400
]
111445620
Enzymes [BR:
cmos01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
111445620
Spliceosome [BR:
cmos03041
]
Complex B
Other components
Prp19 complex
111445620
Complex C
Prp19-CDC5 complex
111445620
Ubiquitin system [BR:
cmos04121
]
Ubiquitin ligases (E3)
U-box type E3
111445620
DNA repair and recombination proteins [BR:
cmos03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
111445620
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR19_1st
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_SCAP
PROPPIN
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_DCAF12
Beta-prop_SPT8
WD40_like
U-box
zf-Nse
PAS_11
KNTC1_N
PUMA_CC
Beta-prop_NWD2_C
V_ATPase_I_N
B-prop_COPA_B_2nd
Motif
Other DBs
NCBI-GeneID:
111445620
NCBI-ProteinID:
XP_022939894
UniProt:
A0A6J1FIG8
LinkDB
All DBs
Position
Unknown
AA seq
521 aa
AA seq
DB search
MNCSISGEIPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLSIDDIVPIKTGKIVK
PRQAASIPGMLGMFQNEWDVLVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKER
DEARSLLAQAERQMPLSSTSISSNAAVNVNGKRVNEDEELGPDGKKIRPGISATVISELT
DCNASLSQQRKKRQIPPTLVPVEALESYTQISSHPLHKTNKPGIISLDINHEKDVIATGG
LDTNAVLFGRSSGEILSTLSGHSKKVTSVKFVTRDDLFLTGSADKTVRVWQPSDDGNYNC
RHILKDHTAEVQAVTVHATNNFFVTASLDNTWCFYDLASGLCLTQVAEDSGTEGYTSAAF
HPDGLILGTGTSEALVKIWDVKSQKNVARFDGHVGAVTAISFSENGYFLATAAHDGVKLW
DLRKLKNFRTFAPYDSETPTNSVEFDHSGSYLAIAGSDIRVYQVASVKSEWNCIKTIPDL
SGTGKATCLKFGTDAKYLAVGSMDRNLRIFGVPGEDGPMET
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgaactgctctatctccggcgagattccggaagagccagttgtctctaagaattctgga
ttactcttcgagaagcggttaatcgagaggcacattttagactatgggaaatgccctgtt
acaggcgaacctctttccattgatgacatcgttccaattaaaactggaaagatagtcaag
cccaggcaagctgctagcatccctggaatgcttggaatgttccagaatgaatgggatgtt
ttggtgctgtccaattttgcactggagcaacagttgcatacagccagacaggaacttagt
catgccttatatcagcatgatgcagcctgtcgtgtaattgcaagacttaaaaaggaacgg
gatgaagctaggtcattacttgctcaggcagagaggcagatgcccttgtcatcaacttca
atatcatccaatgctgctgtcaatgttaatggcaaaagagttaatgaggatgaggaattg
ggtcctgatgggaagaaaatacgtccaggaatatcagccactgttatctctgagctcaca
gattgtaatgcttccctttcacaacaaaggaagaagcggcagatacctcctacgttggtt
cctgttgaggctttagagagttacacccagatttctagtcatccacttcataaaacaaac
aaaccagggattatatctcttgacatcaatcatgagaaggatgtcattgcgactggaggg
ctggacacaaatgctgttctttttggtcgatcatctggggagattttatctacactgagt
ggtcattcaaagaaggtaacaagtgtcaaatttgtcacccgagatgatttattcttgact
ggttcggctgacaagactgtccgtgtatggcaaccatctgatgacgggaactataattgt
aggcacattttaaaggatcacacagctgaggtccaagctgttaccgtccatgctaccaac
aacttctttgttactgcctcccttgataacacatggtgtttttatgaccttgcttcagga
ttatgcctaacccaggttgcagaggattcaggaacggagggctacacatctgctgccttt
catcctgatggactcatccttggaaccggcacgtcagaggcccttgttaaaatttgggat
gtaaaaagtcagaaaaatgtggctagatttgatggacacgttggggcagtgacagccata
tcattttctgaaaatggttacttccttgcgactgcagctcatgatggagtaaagctgtgg
gaccttcgaaaattgaagaacttccgtacatttgcaccttatgattcagaaactccaaca
aactccgtggaatttgaccatagtggatcttaccttgcaattgctggctcagatataaga
gtttaccaagttgctagtgtgaagtctgaatggaattgcatcaaaactattccagattta
tctggcacaggtaaagcaacctgcctaaaattcggaacggatgcaaaatacttggcagtc
ggatccatggatcgaaatcttcggatttttggtgtgcctggggaagacggcccgatggag
acataa
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integrated database retrieval system
