KEGG   Cucurbita moschata (crookneck pumpkin): 111445849
Entry
111445849         CDS       T05248                                 
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
cmos  Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03030  DNA replication
cmos03410  Base excision repair
cmos03420  Nucleotide excision repair
cmos03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cmos00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    111445849
   03410 Base excision repair
    111445849
   03420 Nucleotide excision repair
    111445849
   03430 Mismatch repair
    111445849
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cmos03032]
    111445849
   03036 Chromosome and associated proteins [BR:cmos03036]
    111445849
   03400 DNA repair and recombination proteins [BR:cmos03400]
    111445849
DNA replication proteins [BR:cmos03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    111445849
  DNA Replication Termination Factors
   ELG1-RFC complex
    111445849
Chromosome and associated proteins [BR:cmos03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    111445849
DNA repair and recombination proteins [BR:cmos03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     111445849
  Check point factors
   HRAD17(Rad24)-RFC complex
    111445849
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 RuvB_N AAA_16 DUF3802 AAA_assoc_2 Mg_chelatase AAA_11 AAA_5 AAA_14 SLFN-g3_helicase AAA_24 PhoH ResIII AAA_2 nSTAND3 DUF3853 AAA_19 AAA_18 AAA_30 NPHP3_N AAA_28 AAA_7 TIP49 AAA_25 RNA_helicase Ribosomal_L5_C AAA_17 DNAX_ATPase_lid CPG4 DUF815 Cdc6_lid NB-ARC bpMoxR Parvo_NS1
Other DBs
NCBI-GeneID: 111445849
NCBI-ProteinID: XP_022940132
UniProt: A0A6J1FIS1
LinkDB
Position
Unknown
AA seq 337 aa
MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL
AIAHELFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII
LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMG
KRILHISNEEGLSLDEEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGII
PREVVDELFAACRSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQTAKIC
KKLAEADKCLVDGADEYLQLLDVVSQTMQALSSSMQL
NT seq 1014 nt   +upstreamnt  +downstreamnt
atggcgccattgttgcagagctctcaaccatgggtggagaaatatcgaccgaagcaagtg
aaagatgtggcgcatcaggatgaagtcgttcgggtcctgaccaacaccctcgagacttcc
agttgtcctcatatgctcttctatggaccgccaggtaccggaaaaaccaccaccgccctc
gcgattgctcatgaactattcggtcctgaactttacaagtccagagttttggaattgaat
gcaagtgatgaccgtgggattaatgttgttcggactaagataaaagattttgctggtgtt
gctgtaagcagtggccaacgccaggggggttatccttgcccaccattcaagataatcatt
ctggatgaggctgattcaatgactgaagatgctcagaatgccctgaggcgtaccatggaa
acacactccaaagtaacacgattcttttttatatgcaactatatcagcaggattatagaa
ccccttgcatcaaggtgtgcaaagttcaggtttaagccactctctgaagaggttatgggt
aagcgtatattgcacattagcaatgaagaaggtctaagtctagatgaagaggctctttca
accttaagttcaatctctcaaggtgacctgcgtcgagctatcacatatttacagtcagct
gcacgcttatttggatcatcaatctcttccaaggatctgattagcgtgtctgggattatc
ccacgggaggttgttgatgagctttttgctgcttgtagaagtggtaacttcgatcttgca
aataaggaagtcaataatgtaattgcagaaggatatcctgtggctcagatgctttcacag
atatttgaggtggttattgaagcccatgatttgcaagatgaacaaacggccaagatatgc
aagaagttggctgaagcagataagtgtctggttgatggtgcggatgaatatttgcagctg
ctggatgtggttagtcaaacaatgcaagctttgagtagcagcatgcaactgtaa

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