Cucurbita moschata (crookneck pumpkin): 111445849
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Entry
111445849 CDS
T05248
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03030
DNA replication
cmos03410
Base excision repair
cmos03420
Nucleotide excision repair
cmos03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111445849
03410 Base excision repair
111445849
03420 Nucleotide excision repair
111445849
03430 Mismatch repair
111445849
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmos03032
]
111445849
03036 Chromosome and associated proteins [BR:
cmos03036
]
111445849
03400 DNA repair and recombination proteins [BR:
cmos03400
]
111445849
DNA replication proteins [BR:
cmos03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
111445849
DNA Replication Termination Factors
ELG1-RFC complex
111445849
Chromosome and associated proteins [BR:
cmos03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
111445849
DNA repair and recombination proteins [BR:
cmos03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
111445849
Check point factors
HRAD17(Rad24)-RFC complex
111445849
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
AAA_22
Rad17
RuvB_N
AAA_16
DUF3802
AAA_assoc_2
Mg_chelatase
AAA_11
AAA_5
AAA_14
SLFN-g3_helicase
AAA_24
PhoH
ResIII
AAA_2
nSTAND3
DUF3853
AAA_19
AAA_18
AAA_30
NPHP3_N
AAA_28
AAA_7
TIP49
AAA_25
RNA_helicase
Ribosomal_L5_C
AAA_17
DNAX_ATPase_lid
CPG4
DUF815
Cdc6_lid
NB-ARC
bpMoxR
Parvo_NS1
Motif
Other DBs
NCBI-GeneID:
111445849
NCBI-ProteinID:
XP_022940132
UniProt:
A0A6J1FIS1
LinkDB
All DBs
Position
Unknown
AA seq
337 aa
AA seq
DB search
MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTAL
AIAHELFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII
LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMG
KRILHISNEEGLSLDEEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGII
PREVVDELFAACRSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQTAKIC
KKLAEADKCLVDGADEYLQLLDVVSQTMQALSSSMQL
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atggcgccattgttgcagagctctcaaccatgggtggagaaatatcgaccgaagcaagtg
aaagatgtggcgcatcaggatgaagtcgttcgggtcctgaccaacaccctcgagacttcc
agttgtcctcatatgctcttctatggaccgccaggtaccggaaaaaccaccaccgccctc
gcgattgctcatgaactattcggtcctgaactttacaagtccagagttttggaattgaat
gcaagtgatgaccgtgggattaatgttgttcggactaagataaaagattttgctggtgtt
gctgtaagcagtggccaacgccaggggggttatccttgcccaccattcaagataatcatt
ctggatgaggctgattcaatgactgaagatgctcagaatgccctgaggcgtaccatggaa
acacactccaaagtaacacgattcttttttatatgcaactatatcagcaggattatagaa
ccccttgcatcaaggtgtgcaaagttcaggtttaagccactctctgaagaggttatgggt
aagcgtatattgcacattagcaatgaagaaggtctaagtctagatgaagaggctctttca
accttaagttcaatctctcaaggtgacctgcgtcgagctatcacatatttacagtcagct
gcacgcttatttggatcatcaatctcttccaaggatctgattagcgtgtctgggattatc
ccacgggaggttgttgatgagctttttgctgcttgtagaagtggtaacttcgatcttgca
aataaggaagtcaataatgtaattgcagaaggatatcctgtggctcagatgctttcacag
atatttgaggtggttattgaagcccatgatttgcaagatgaacaaacggccaagatatgc
aagaagttggctgaagcagataagtgtctggttgatggtgcggatgaatatttgcagctg
ctggatgtggttagtcaaacaatgcaagctttgagtagcagcatgcaactgtaa
DBGET
integrated database retrieval system