Cucurbita moschata (crookneck pumpkin): 111445957
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Entry
111445957 CDS
T05248
Name
(RefSeq) uncharacterized protein LOC111445957 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111445957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111445957
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111445957
mRNA degradation factors
5'-3' decay
Decapping complex
111445957
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
111445957
NCBI-ProteinID:
XP_022940287
UniProt:
A0A6J1FJ64
LinkDB
All DBs
Position
Unknown
AA seq
814 aa
AA seq
DB search
MSRLIESSIMDGFGNGARVQVASTSKDLTRFGANSTEDALFDASQYAFFGKDMEEVELGG
LEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKLNDIGSGPRGVIGGGLLR
ENSEWACEDGFPNWIAQQGFNVETAQEGKRWSSHPHPSSLAESTSLYRTSSYPDQPQPQP
QQYHQQFSSEPILVPKSSYPSSGISPHASPNQHPSHLNMPFVPGGHHVLSLSPSNLTPPN
SQIAGFNSVSRFGGNMPQHSSGPSINGGPSSQWMNQTGMFPGEHVSHLSNLLPRQLSNQN
GFPQLPPQQQQQQQQHRLQHPVQPPFVGSLPGLQTHLFNSHSSSGPPHLMNKLEAMLGLP
DMRDQRPRSQKGRQTAHYAHQSYETNNFRSDFGWPFRRSKYMKAFELENIVRIQLAATHS
NDPYVDDYYHQACLARKSAGAKLRHHFCPNQLRDLPPHARANSEPHAFLQVEALGRVPFS
SIRRPRPLLEVDPPSSTVGGSNDQKVPEKPLEQEPMLAARVTIEDGQCLLLDVDDIDRFL
QFNQFQDGGAQLRRRRQVLLEGLAASFHIVDPLSKDGHAVGLAPKDDFVFLRLVSLPKGR
KLLGKYLQLLVPGGELMRTVCMAIFRHLRFLFGSPDPAAADSVNDLAKIVSSRTHSMDLG
ALSACLAAVVCSSEQPPLRPLGTPAGDGASLILKSVLERATELLTDRHAASNYNITHRAL
WQASFDEFFGILTKYCVNKYDSIMQSLLRQSPQNAASAVSDAAAAISQEMPVEVLRASLP
HTDEHQRKVLIDFAQRSMSVGGFNNSSRNNFDSL
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagactaattgagtcgtcgataatggatggtttcggcaacggagctagagttcaa
gttgcgtctacatccaaggatctcacgcgttttggagccaattcgacggaagatgctcta
tttgatgcatcacagtatgcattttttggcaaggatatggaggaggttgaattgggagga
ttagaagatgaagaggatgatactcttgctgctgggattgacgaggaggagtttttgttt
gataaagagagtgaggattttagacctccatctgatattgatgatcttgtttcttcattt
gaaaagttaaacgacattggaagtgggccaaggggagttattggaggcggattattgaga
gaaaatagtgaatgggcatgtgaggatggtttccctaattggattgcccagcaaggcttc
aatgttgaaaccgctcaggaaggcaaaagatggtcatcacatccccatccttcttccctt
gctgaatcgacgtctctgtataggacatcatcataccctgatcagccacagccacagcca
caacaataccatcaacagttctctagtgagccaattttggtgccaaagtcttcataccct
tcaagcggaatatctcctcatgcttctcccaaccagcatccaagccatctaaatatgcct
tttgttcctggtggacaccatgtattatcgttatctccatcaaatctcactcctccaaac
tctcagattgccggttttaattctgtatcacggtttggaggaaatatgccacaacacagt
tctggcccctctattaatggtggaccatcgagccaatggatgaaccaaaccggcatgttt
cctggagaacatgtcagtcacctaagcaatttattgcctcgccagttatccaatcagaat
ggatttccacagttaccaccacagcagcagcagcagcagcagcagcataggttgcagcat
cctgttcagcctccgtttgttggctctctaccaggtttacagacccatcttttcaattcc
cattcgtcttcaggcccacctcacttaatgaacaagttggaagccatgcttggtctacca
gatatgagggatcaaaggcctaggtctcagaaaggtagacagactgcacattatgcccat
cagagttatgagactaataattttaggagtgactttgggtggcctttccgtagatccaag
tatatgaaagcttttgaattagagaatatcgttagaatccagcttgcagcgacacatagt
aatgatccatatgtagatgactactaccatcaggcttgtcttgcaagaaaatctgcgggt
gcaaagttgaggcatcatttctgtcctaatcaactaagggatcttccaccacatgctcgt
gccaatagtgagccacatgcttttcttcaggttgaagcacttggtagggttccattttca
tcaattcgtagacctcgccctcttcttgaagttgatcctccgagttcaactgttggtgga
agcaatgatcaaaaagttcctgagaagccccttgaacaggagcctatgttggcagctagg
gttacaattgaggatggtcaatgtctactccttgatgtggatgatatcgatcgtttcctg
cagttcaatcagttccaagatggtggtgctcagttaagaagacgtcgccaggtcctgttg
gaaggactggcagcatcatttcatatagttgatccactcagtaaagacggtcatgcggtt
gggctggctccaaaggatgatttcgttttcttgaggttagtttctcttcccaagggtcga
aaacttctaggtaagtaccttcagttgcttgtgccaggaggcgagcttatgcgaacagtt
tgtatggctatttttcgtcacttgagattcttgtttggaagtcctgatcctgcagcagct
gattctgttaatgatctcgcaaaaattgtttcatcgcgaacccatagtatggatcttgga
gctctgagtgcatgtcttgctgctgtagtttgttcctcagagcaacctccacttcgccct
ctagggacccctgctggagatggggcgtccttgattttgaaatctgttcttgagagggct
acggagctcctaaccgatcgtcatgctgcaagtaattacaacattactcatcgagctctt
tggcaggcttctttcgatgaattctttggcattctcacaaagtattgtgtgaacaagtat
gatagtatcatgcaatcactactccgacaatctccacagaatgcagcatctgctgtctca
gatgcagccgctgccattagtcaagaaatgccagttgaagtattacgagcaagtcttccc
cacaccgacgagcaccagagaaaggtgttgatagattttgcccaacgctcaatgtctgtt
ggtggattcaacaacagttctcgcaacaattttgattccttgtga
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