Cucurbita moschata (crookneck pumpkin): 111445960
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Entry
111445960 CDS
T05248
Name
(RefSeq) serine/arginine-rich splicing factor SR45-like isoform X1
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03013
Nucleocytoplasmic transport
cmos03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111445960
03015 mRNA surveillance pathway
111445960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111445960
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111445960
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_occluded
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
111445960
NCBI-ProteinID:
XP_022940297
UniProt:
A0A6J1FJ74
LinkDB
All DBs
Position
Unknown
AA seq
411 aa
AA seq
DB search
MAKPSRGRRSPPSRSGSSSRSRSYSGSDSRSSSRSRSRSRSVSVSHSRSISSSSSPSRSA
SSRSRSPPPQRKSSTETARRTRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGH
LREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARF
TLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDLKRQREPSPRRKPPSPRRRSPVA
RRGGSPRRQPDSPRRRPESPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRR
IRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPG
AAGRRGRSSSYSASPSPRKVARRVSRSPRSRPLRGRSSSRSSSSSSPPRKP
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaccaagcagaggccgtcgctcacctccgtcgagatcgggatcctcttcacgt
tcccgctcatactccggctctgattcccgctccagttcccgctcacgctccaggtcacgg
tctgtatctgtgtcccattccaggtccatttcctcgtcttcgtctccctcccgcagtgct
agttctcggagccgaagtccccctcctcagagaaagagttctactgaaacagctcggagg
actcgcgcttcacctccaccagctaaacgaagttctccaccacccaggaaaccatcacct
gtacgcgagtcacttgttcttcacattgatgcactgagtaggaatgtccatgagggtcat
ttaagagaaatcttcagtaattttggtgaagtagtcaatgttgagctggcaatggatcgc
acagtcaaccttcctaaaggatatggatatgttgaattcaaaacgagatctgatgctgaa
aaagcccaagtgtatatggatggtgcccaaattgatggaaatgttattcgagcaagattt
acattgcctcaaagacagaaaatggcatcacctccaaggactgcagcagctgcttctaag
agagatggtcctaagcctgaaaatgttggtgctgatgctgagaaggacgatttgaaaaga
cagagagaaccttcacctcgtcgaaagcctccctcacctagaagacgctcgcctgttgct
cgacgaggtgggtctcccagaagacaacctgattctccacgccgccgtccggagtctcct
ccccgtcgccgtgttgactctcctcctagaaggaggcctgcatcaccaatgagaggtggc
cgttccccatcacctttgggaaggcgacatagatctcccccaaggccctctccaagaaga
attcgtggcagccctgttcggagacgttcaccacctcctcctaggcgccgtacacctcct
cgacgggctcgaagtcctcccagaaggtctccagtagttcgtagacggagccgttcaccc
attagaagaccaggtcgatcacgttcccggtcattttcaccacggagaggtcggccggga
gctgctggtagacgtgggagatcatcatcttactctgcatcgccaagtccacggaaggta
gccaggagagtatctcgcagtccaagaagtaggccattgagaggtagaagcagcagcagg
agcagtagcagtagttctccacctcgcaagccataa
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