Cucurbita moschata (crookneck pumpkin): 111446048 Help Entry 111446048         CDS       T05248                                  Name (RefSeq) symplekin isoform X1   KO K06100   symplekin Organism cmos  Cucurbita moschata (crookneck pumpkin) Pathway cmos03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:cmos00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     111446048  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:cmos03021]     111446048    03019 Messenger RNA biogenesis [BR:cmos03019]     111446048 Transcription machinery [BR:cmos03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      111446048 Messenger RNA biogenesis [BR:cmos03019]  Eukaryotic type   mRNA processing factors    3' end processing     Cleavage stimulation factor (CSTF) complex      111446048     U7-dependent histone pre-mRNA processing factors      111446048 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Symplekin_C SYMPK_PTA1_N DUF3811 Motif Other DBs NCBI-GeneID:  111446048 NCBI-ProteinID:  XP_022940450 UniProt:  A0A6J1FQL4 LinkDB All DBs Position Unknown AA seq 1307 aa AA seqDB search MAGVLRERALSLLAAANNHGDLTVKISSLKQVKDIILSIEPSFAAELYSYLVELQSSPES LLRKLLIEVIEDIGLRAMEHSPLLMSVLLASLKDEDSVVAGQSIISGQKLFCGTLREMTL QFHRRGKVERWLEEMWMRMLKFKDDVLAIAIEPGSVGKRLLALKFLETYVLLFTSDTNDP QKAISEGNGDVFNISWLAGGFSILDPVGLMSEASRMLGILLNLLQTSSVPGTYTVTVVSS LAAIARKRPVHYGHILSALLELVPSFEMVRGRHAASIQYSIRSALLGFLRCMHPAFVELG FQSRDRLLKALRAMNAGDAADQVIRQVDKMVKAADRASRDAWPSKDDQSSIQHNASVDLT RKRPRLLDDEELSNGREVSKQSRFGPDVHLISPNQKDGSLQNAVSNGTSVPTLDVELSPA EQMIAMIGALLAEGERGAESLEILISNIHPDLLADIVITNMKNLPKASPPLTRHGDLPVT RQGSSHVKVLAPSAPLSNVQTSVATAQVPFSLATSAGSTFAESTVNSLPVDSKRDPRRDP RRLDPRRGGVSSASSVEEESSNISDIDNSISLGKSASVPVTATIENSLVSPIAKTRVEEK IVETPFDLGTDQLTPKSNSPDRAKKVETILEISAPLDPMPSAVGKADDGLVAVNLLDDSV PKRDDTPSSMEYDQYSPSVTNAAASEDTCEELPLLPPYVDLTPEQQITVRNLAAEKIFDS CKNSTGADCNQIRLAIIARLVAQVDADDDIVRMLEKQVAIDYQQQKGHELALHVLYHLRS LDILDSVESSSSAVYEKFLLVVAKSLLDSFPASDKSFSRLLGEVPLLPNSTLDLLRNLCF CDNDDNYGNDTPDIDRVTQGLGTVWNLIVKRPYSRQACLDIALKCAMHSEVKVRATAIRL VANKLYRLSYISDGIEQHATNMFLSAVDDGDRTDVVPSPCVSIEQRAGAEGESQETSVCG SQVSDPGTSENDSMRSSQPTVRGSSTSSLSEAERHISLLFALCVKKPRLLQFVFDAYGRA SRSVKEAVHEHIPNLITALGSSDSELLRIISDPPQGSEHLLALVLQVLTRETTPSSDLIA TVKHLYETKLKDVTILIPMLPSLSKNEVLPIFPRLVDLPLEKFQRALAHILQGSAHTRPA LTPVEVLIAIHNIIPEKDGLALKKITDACSACFEQRTVFTQQVLAKALGHMVEQTPLPLL FMRTVIQAIDAFPTLVDFVMEILSKLVNRQVWRMPKLWFGFLKCAFQTQPHSFRVLLQLP PPQLENALNKYANLKGPLAAYASQPSTKSTLSRPMLVVLGLENERHL NT seq 3924 nt NT seq  +upstreamnt  +downstreamnt atggctggagttctcagagaaagagcactgtctctcctcgccgccgctaacaaccacggc gatttaacggtgaaaatttcatctttgaagcaggtaaaggatattatactgtctatcgag ccatctttcgctgcagagctttactcctacttggtcgagcttcagtcctcccccgagagc ttactacgtaaattgttgattgaggtgattgaagacattggattaagagccatggaacat tctcctctgttaatgtcagttttattggcatctttaaaggatgaagactctgttgtagca ggacaatcaattattagtggccaaaaattattttgtggtactttaagagagatgacattg cagttccatcggcggggtaaagttgagagatggcttgaagaaatgtggatgagaatgttg aagtttaaagatgatgttttggcaattgctatagagcctggttctgttgggaagaggttg ctggctttgaaatttttggaaacatatgttctactttttacgtctgacacaaatgatcca caaaaagctatctcagaaggaaatggggatgtttttaacatttcatggctagctggtggt ttttctattttggatccagtcgggttaatgtcagaagctagtaggatgcttggtattctg ttgaatttgttgcagaccagttctgttccgggtacatacacagtaacagttgttagtagt ttagcagctatagcaaggaaaagaccagttcattatggtcacattctatcggcactgctg gaattggttccaagttttgagatggtaagggggcgtcatgctgccagcattcagtattct ataagatctgcccttttgggattcctaaggtgtatgcatccagcttttgtagagcttggt tttcagtcaagagatagattgctaaaggctttaagagctatgaatgctggagatgctgca gatcaggttatcaggcaagtggacaaaatggtgaaggctgcagatcgagcttcgcgtgat gcttggccgagcaaggatgatcaatcatcaattcagcataatgcatcagtggatctaact agaaaaagacctaggcttctggacgatgaagaactttccaatggtcgtgaggtttccaag caaagtcgttttggtccagacgttcacctaatctccccaaatcaaaaagatggttctctg cagaatgccgtctctaatgggacatctgttcctacgttagatgttgaattaagtccagca gagcagatgattgctatgattggtgccttacttgctgaaggggagcgaggtgcagagtcg cttgaaattctgatttcaaatattcatccggacttgttagctgatattgtcataactaac atgaagaacttgcccaaagcatcccctcctttaactaggcatggggacttgcctgtaact cgtcaaggaagtagtcatgtgaaggttctggcaccatcagccccattaagtaatgtgcaa acttcagttgctactgcacaagttcctttttctttggccacctcagctggttcaactttt gctgagtctactgtcaatagtctccctgtcgattctaaacgcgatccaagaagggatccc cgtcggcttgatcctcgccgtggaggagtatcttctgcttctagtgtggaagaggaaagt tcaaatatatctgatattgacaactccatatctttgggaaaatctgcttcagttcctgtt actgcaacgatcgagaattccttggtttctcctatagcaaaaacaagagttgaagaaaaa atcgtagagaccccattcgaccttggaacagaccaattaacccccaaatcaaattctcct gatagagccaagaaagtcgaaactatattagaaattagtgcccctctggatcccatgcct tctgctgttggaaaagctgatgatggtttagtggcagttaatttgctcgatgactcagtg ccaaagagggatgatacaccatcttccatggaatatgatcagtattctccatcagttaca aatgcagctgcatctgaagatacctgcgaggaattgcctctgctcccaccatacgttgac ttgactccagaacagcaaataactgtaagaaatttggcagctgaaaagatatttgattca tgcaagaattccactggagcagattgcaatcagatacgcttggcaataattgctcgattg gttgctcaggttgatgctgacgatgatattgttcgaatgttggaaaagcaagtcgctatt gattaccaacagcaaaaggggcacgagcttgctttgcatgtcttatatcacctacgttca cttgatattctggattcagttgaaagctcttcttctgctgtttacgagaagtttcttcta gttgtggctaaatcgctgctagattcttttccagcttcagataaatcttttagcagactt cttggtgaagttccacttttgcccaactctacattggatctattacgtaacctttgcttt tgtgataatgatgacaactacgggaatgatactcctgatattgaccgtgtcactcaaggc cttggcactgtttggaatttgattgtgaagcggccatatagtcggcaggcttgcttagat attgctctaaagtgtgctatgcattcagaagttaaggttcgagcaacagctattagactg gtggcaaacaaactctaccggttaagttacatttcagatgggattgagcagcatgcaaca aacatgttcctgtctgcagtagacgatggagataggacagatgtagtgccttcaccatgt gtatcaattgaacaaagagctggagcagagggggagagtcaggaaacatccgtctgcggt tctcaagtgtcagatcctggaacctcagaaaacgattccatgaggagttcacaacctaca gttcgtggcagttcaacctcgtcactttcagaagccgaaagacatatttctcttcttttt gctttatgcgtgaagaaacctcgtcttcttcagtttgtatttgatgcttatggacgggct tctagatcagtgaaagaggccgttcatgaacatatccctaatcttattacggccttaggg tcatctgattctgaattgcttagaataatatcagatcctcctcaaggaagtgaacatctt ttagcactggtactacaggtgctaactcgagagacaacgccttcttctgatctgatcgca actgttaaacatttatatgaaactaaactcaaggacgtgacaattctcatcccaatgttg ccctcactttccaaaaatgaggttttacctatttttcctcgattggtggatcttccattg gagaagtttcagagagcgttggctcacatattacagggttcagcacatacacgtccagct ttaacacctgttgaagtattgattgccatccacaacataattcctgaaaaagatggcctt gcattaaagaagataacggatgcttgttcagcttgttttgagcaacgtacagttttcact cagcaggttttagcaaaagccttgggccacatggttgaacaaaccccacttcctcttctc ttcatgagaactgtgattcaggcaattgatgcttttcctactctggttgattttgttatg gagatactttccaaacttgtaaacagacaggtctggagaatgccaaaactgtggtttggt tttttgaaatgtgcatttcagacgcagcctcattcctttcgagtactattacagttgcca ccgccacaacttgaaaatgctttgaacaaatatgctaaccttaaaggtcctcttgctgct tatgccagccagcccagcacaaaatctactctctctagaccgatgctcgtagttctgggt cttgaaaatgaaaggcatttgtag

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