Cucurbita moschata (crookneck pumpkin): 111447032
Help
Entry
111447032 CDS
T05248
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111447032
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111447032
03012 Translation factors [BR:
cmos03012
]
111447032
Enzymes [BR:
cmos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111447032
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111447032
Translation factors [BR:
cmos03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111447032
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
R3H
Helicase_C
DEAD
HA2_C
HA2_N
nSTAND3
ATPase
AAA_19
Ank_2
AAA_22
Ank_5
ABC_tran
AAA_23
Rad17
AAA_7
PhoH
AAA_16
T2SSE
Motif
Other DBs
NCBI-GeneID:
111447032
NCBI-ProteinID:
XP_022941757
UniProt:
A0A6J1FT07
LinkDB
All DBs
Position
Unknown
AA seq
1286 aa
AA seq
DB search
MAKKKQKKGEQKPKPKAFAVADSEITRALERFCLSNDEVFTFEADLSKRERALVHEECRK
MGLTSKSYGRGDQRRVSIYKSKPQKDTMKFSEKTKSVLDDLFSSYPPDDGELGRETIGKC
KKKTHKQSRKKDDIFWRPSMNKEEIMKKVESYTTRVKSVANLKKISGDRSKLPIASFQDV
ITSTVESHQVVLISGETGCGKTTQVPQFLLDYMWGKGEACKIICTQPRRISATSVSERIS
YERGENVGSDVGYKIRLESKGGRHSSIVLCTNGILLRVLISEGLGKLTTEASEKSRKNVV
SDLTHIIVDEVHERDRYSDFILAILRDLLPTYPHLRLILMSATIDAERFSKYFGGCPIIS
VPGFTFPVKNFYLEDVLSIVKSSEENHLDDSTVGASDEETELTEEDKLSLDEAIHLAWLN
DEFDPLLELVASEGSSQIFNYQHSVTGLSPLMVLAGKGRVSDVCMLLSFGAMCELQAKDG
MTALEMAERGEHKETAEAIRKHLESSMSNSKEEQRLIGKYLARNSNSVDVALIDLLLGKI
CLDSKEGAILVFLPGWDDISKTRERLSINPIFKDASKFLIISLHSMVPSKEQKKVFKRPP
PGCRKIILSTNIAETAITIDDVVYVIDSGWMKEKSYDPYSNVSTFQSSWISKASAKQREG
RAGRCQPGICYHLYSKFRASSLPDFQVPEIKRMPIEELCLQVKLLDPNCRIEDFLQKTLD
PPVFDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLEPALT
LACASDYKDPFTLPMLPSERKKAAAAKAELASLYGGHSDQLAVVAAFDCWKNAKRRGQEA
RFCSKYHISPSTMSMLFGMRRQLEMELVQNGFIPEDISTCSLNARDPGILHAVLVAGLYP
MVGRLLPPQKKGKRAVVETGSGGRVLLHRQSLNFELSHKLTDNCPLIVYDEITRGDGGTH
IRNCTVVGPLPLLMVAKEIAVAPAKENDNGKGDIVNDTYGNDEAGVVETVEDKMDIENKS
NEQPEEMIMSSPDNSVTVVVDRWLYFWSKALDIAQLYCLRERLSAAILFKVKHPNKILPP
VLGASMHALACILSYDGLTGISLESVEMLTTMVDATEISNFVPGRSNETHKKVSSFHRSL
SNYNDFTVPESSGTSNLNHPFSQNFLPPPDFRAANPSDPSSPNFRAFPNSVYARSTLQPH
RGQKHPQPAKPFQDQNATQQQHAPEHKTRKQRKSRRERKAAQQQKHPQLQKPPSGEPSLN
GYGLSTYGPYGLRGISLKRPRGNGAG
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaagaagcagaagaagggggagcagaagccgaaacccaaggcatttgcagtc
gcggacagtgaaattactcgggcactcgagcggttttgcttgtccaatgatgaagttttc
acttttgaagctgatctttctaagcgtgaacgtgctctcgtgcatgaagaatgcaggaaa
atgggtttgacatcaaagagttatgggcgtggagatcaacggcgcgtttcaatatataaa
tccaaaccgcaaaaggacaccatgaagttttctgaaaaaaccaaaagtgttttggacgat
ttatttagttcatacccacccgatgatggagagttgggcagggaaacaattgggaaatgc
aagaaaaagacccataaacaaagtcgaaagaaagatgatattttctggaggccatcaatg
aacaaggaagagataatgaagaaagtggaatcatatactactagagtgaagagtgttgca
aatctgaaaaagatatcgggagatagatccaagcttccaattgcatcctttcaagatgtc
attacttcaacagttgaatcgcaccaggttgttctcatatctggcgaaactgggtgtgga
aagacaacgcaggttcctcagtttcttttggattatatgtggggtaagggagaggcatgt
aagataatctgtacccaacctcgacgaatatctgcgacatcagtttctgagcgaatctcc
tatgaaaggggagaaaatgttggaagtgatgttggatacaagatacggttggaaagtaaa
ggtggcaggcactcatcaattgtactctgcacgaatggtattctgttaagggtgctgatt
tctgaagggttgggaaaattaactacggaagcttcagaaaaaagtaggaaaaatgttgtg
tctgacttaactcacattattgtggatgaagttcatgaaagggatcgctactctgatttc
attctagcaattttgagagacttgcttcctacatatcctcatctacggctgatactaatg
agtgctactattgatgctgaacggttttcaaaatattttggtggctgtccaatcatcagt
gttcctggattcacgtttcctgtaaaaaatttctatcttgaggatgtactatctatagtg
aaatcttcggaagagaaccaccttgatgatagtacggtgggtgcttcagatgaagaaact
gagctaacagaagaagacaagctttctttggacgaagcaattcacttggcttggttgaat
gatgaatttgatccccttctagaattggttgcttctgagggatcctctcaaatttttaat
tatcagcattccgtgacgggcttatcacctctaatggtgcttgctggaaagggtagagtt
tccgatgtttgcatgctgctatcttttggtgcgatgtgtgaattacaggccaaggatggc
atgactgcgttggaaatggctgagcgaggagaacataaagaaactgctgaagcaatcaga
aaacatttggaaagttccatgtccaactccaaggaagaacaacgattgattggtaaatat
cttgcaagaaattctaattctgttgatgttgctcttatagacctgctgttagggaaaata
tgtcttgattcgaaagaaggagctattcttgttttccttcctggatgggatgatatcagc
aagactcgggaaagactttcaatcaaccctatcttcaaggatgcatcaaaatttttaata
atatctcttcattcaatggttccttctaaagagcaaaagaaggttttcaaacgaccacct
cccggttgccgcaaaattattctgtccactaatattgctgaaacagccattaccattgat
gatgtggtttatgttatagacagtggatggatgaaagaaaaaagttatgatccttacagt
aatgtttctacttttcaatcatcttggatatcaaaggctagtgccaagcagcgtgagggt
cgagccggtcgctgccagcctggcatatgctatcatctttattcaaaatttcgtgcatct
tctcttcctgattttcaagttcctgaaattaagagaatgccgatagaggaactgtgtttg
caggtgaaattgcttgatccaaattgtaggatagaggatttcttgcagaagactttggac
cctccagtttttgatactattcgtaatgcaatattagtccttcaggatattggggctttg
tcactcgatgaaaaactgactgagctcggggagaaattaggttctttgcctgttcatcca
gtaacaagcaagatgcttattttcgctatattgatgaactgcctcgagcctgctctaact
ctggcatgtgcttctgactacaaggaccctttcactcttcccatgttaccaagcgaaaga
aaaaaggctgctgcggctaaagcagagcttgcttctttgtatggtgggcatagtgatcaa
ctggctgtggtagctgcatttgattgctggaagaatgccaaaagaaggggtcaagaggcc
cgcttctgttctaaataccatatctctccgagcactatgtctatgctttttggcatgcgg
agacaactcgaaatggaactagttcaaaatggttttatacctgaggatatttcaacttgc
agcttgaatgctcgtgaccctggcatactccacgctgtccttgtggctggtttatatcca
atggtgggaagattacttccacctcagaaaaagggaaaacgagctgttgttgaaactggt
tcggggggtagagttcttttgcaccgacagtcccttaactttgaactgtcacacaagcta
acagataattgccctctaattgtttatgatgagataacccgtggggatggtggtacacat
ataagaaactgtaccgttgtcgggcctctcccattattaatggttgcaaaggagattgct
gttgcccctgcaaaggagaatgataatggtaaaggtgatattgtcaatgacacctatggc
aacgatgaagctggtgtagttgaaactgttgaagataaaatggatatagaaaataaatca
aatgaacaaccagaagagatgattatgtcctcccctgataactcagtaactgtggttgtt
gaccgttggttatacttttggtcaaaggcacttgatattgctcagttatactgcttgaga
gagcgattatctgcagcaatcttattcaaagtaaagcatccaaacaaaattcttcctcct
gttcttggggcctctatgcatgccttagcttgcattctatcatatgatgggttaactggt
atatcattagaatcagtagaaatgttgacgacgatggtagatgcgactgagattagcaat
tttgtacctgggaggtccaatgaaacacacaagaaagtaagttcgtttcatagatcactt
tcaaattataatgattttactgttccggaatcaagtggaacatcaaatttaaaccatccg
ttcagtcagaattttttaccaccgcctgattttagagcagcaaacccaagtgacccatca
agccctaattttagggctttccctaattcagtctatgcaaggtcaacactgcagccacat
agagggcagaagcatccccagccggccaaaccctttcaagaccaaaatgctacccagcag
cagcatgctccagagcacaaaacacgtaaacagagaaagtcccgcagggagcgcaaggca
gctcaacaacagaaacatccccaactgcagaaacctccatcaggagaacccagtttaaat
gggtatggattaagcacgtatggaccatatggactccggggcatttctctaaagcgacca
cgtggtaacggggcgggataa
DBGET
integrated database retrieval system
