Cucurbita moschata (crookneck pumpkin): 111447068
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Entry
111447068 CDS
T05248
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
111447068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmos03400
]
111447068
DNA repair and recombination proteins [BR:
cmos03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
111447068
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
111447068
NCBI-ProteinID:
XP_022941812
UniProt:
A0A6J1FT56
LinkDB
All DBs
Position
Unknown
AA seq
1255 aa
AA seq
DB search
MVKRRLYEFKHPFNDYPFEAMCCGSWQAAEKIRIRNGSITLHLVNDQFMILERGPYTDFR
IRSRQATSSDCTCFLRPGVDICVLSSSRSTENTDVQGSEPVWIDAKISSIERKPHDSGCS
CQFYVQLYAADKKPLGSEKGSLCKEIIAMGIDQIFVLQKVRKHFCEDQHYRWDFSEDCAL
LPKTKLLLGKFLSDLSWLVVTSALKHVTFDVRSVDNKILYQVLESNQKGTSVASDKILYV
VNFRNDDGMFIPIIHQLNSSDRIEMSPADDAFDSQLHSFTDLMDLRRSKRRNVQPDRFLG
CDSINESEIDYSGTRIYKTEQLNDDDEMTLPLAYLFATNAGPSKVKTENESNNHFNQLSV
HDDLSDFKSRLRSLEMSDEVEDKNQLAIVPVIDEQPIASDPYPDDANGCGNFTKQITEMS
ARYYYINNKRKVRKRNFSDFGDENFENCSWGKASSSKGRKTRYHSICYKEDGSPKERTWQ
KRSLGAGAYKDLINSFLKNIDSTIQKEEPQIIDQWKEFKNKTSLDKRNEMELPSNEEKEE
NSEIEMLWREMEISLASSYLIDANQGFSNGTSVEPEQKESKWCQHEFKLNEEIGMLCHIC
GFVSTEIKDVSAPFMQHMSWNSEERRIEEKDEHNTDDEEEMNIFCGLPSSDGTFSEENDN
VWALIPEFRRKLHLHQKKAFEFLWKNVAGSMVPALMDQSSRKIGGCVISHTPGAGKTFLI
ISFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEVPVPIHLIHGRRTYRVFRSNSKPV
TFAGGPRPTDDVMHILDCLEKIKKWHAHPSVLVMGYTSFLTLMREDAKFAHRKYMAKVLR
QSPGILILDEGHNPRSTKSRLRKVLMKVETDLRILLSGTLFQNNFCEYFNTLCLARPRFV
NEVLKKLDPKFKRKKRKAPHLQEARARKFFLDKIARKIDAGDGEERQEGLNMLRNMTSAF
IDVYEGGSKDGLPGLQIYTLLMNTTDIQQQILNKLHKIMAKYPGYPLELELLITLGSIHP
WLVKTAVCASKFFSERDLMELEGYKFDLRKGSKVMFVLNLVYRVVKKEKILIFCHNIAPV
KLFIELFENVFRWKRGREILALTGDLELFERGKVMDKFEDPLGPSKVLLASITACAEGIS
LTAASRVILLDSEWNPSKTKQAIARAFRPGQLKVVYVYQLLVTGTLEEDKHKRTTWKEWV
SSMIFSEAFVEDPSKWQAEKIEDEVLREMVEEDRVKSFHMIMKNEKASTVIREKD
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atggttaaaagacgtttatatgaattcaagcatccattcaatgattaccctttcgaggcg
atgtgctgtggttcttggcaagctgcggagaagataagaattaggaatggttcaatcacc
cttcatttagtgaatgatcagttcatgattctggaaagaggtccttacacagacttccgc
attaggtcgagacaagcgacttcatctgactgcacctgttttctacgacctggtgttgat
atttgtgtcctctcttcctctcgcagcacggaaaatactgatgtgcaaggttcagagcct
gtgtggatcgatgctaaaataagctcaattgagcggaagcctcatgattctgggtgttca
tgccagttttatgtccaattatatgctgctgataaaaaaccccttggttcagagaaggga
tcgctttgtaaagaaatcatagcaatgggaattgatcagatctttgttctccaaaaggtt
aggaaacacttctgtgaagatcaacactaccgatgggatttctctgaggactgcgctctg
ttgccaaaaacaaaactgcttctgggaaaatttctgtccgatctttcttggttagtagta
acatcagcattgaaacatgtcacttttgatgtaagatcagtggataacaagatcttgtac
caagtgttggaaagtaatcagaagggcacttcagtagcttctgacaagattttatacgtt
gtaaactttagaaatgatgacggtatgtttattccaataatacatcagctaaattcatct
gataggattgagatgtctcctgcagatgatgcatttgacagtcaattgcactcatttact
gatcttatggacttgaggcgttcaaaacgccgtaatgtccaacctgatcgttttcttggc
tgtgatagtatcaatgaatcagaaattgactacagcggaaccaggatatataaaacagag
caattgaatgatgatgatgagatgacattaccacttgcttacctgtttgccacgaatgca
ggtccttcaaaagtaaagacggaaaacgaaagcaacaatcatttcaatcaattgagtgta
catgatgatctctctgatttcaagagcagactaagatcattggaaatgagtgatgaagtt
gaagataaaaatcaacttgctatagttcctgtaattgatgaacagccaatagcatctgat
ccatatcctgatgatgccaatggttgtggtaactttacgaaacagataactgaaatgtca
gctaggtattactacattaacaataaacgcaaagtccggaaaagaaacttttcagacttt
ggagacgagaactttgagaattgtagctggggaaaggcttcgagtagtaaaggtaggaag
accaggtatcattccatatgttataaagaggatggttctcccaaagaaagaacttggcag
aaacggtccttaggtgcaggtgcatacaaggatttgatcaattccttcctgaagaatatt
gactcaacaattcaaaaagaagagccacagataattgatcaatggaaagaatttaagaac
aaaacttccttggataagaggaacgagatggaactgccctctaatgaggagaaggaagag
aactctgagattgaaatgctgtggagagaaatggaaatatcccttgcctcaagttacctt
attgatgctaaccagggttttagtaatggaacatcagtggagcctgaacagaaagaaagc
aaatggtgccagcatgagttcaagttgaatgaagagatagggatgctctgccatatatgt
ggctttgtgagcactgaaattaaagatgtctcagcaccatttatgcaacacatgagctgg
aattccgaagagcggaggattgaagaaaaagatgagcacaatactgacgatgaggaggag
atgaatattttctgtggcctgccttcttctgatggtaccttctcggaagaaaatgacaat
gtctgggccttgatccctgaattcagaaggaaattacatctccaccaaaagaaagcattc
gagttcctgtggaaaaatgttgctggttctatggttccagctctcatggatcaatcatct
cgtaaaataggtggttgtgtgatatcccatacaccaggagctggaaaaacctttctgatc
atctcattcctcgttagttacttgaaactgtttccagggaaaaggccccttgtccttgct
ccaaagacaactctttatacatggtataaggaatttattaagtgggaagttccagtacca
attcatctaatacatggtcgtagaacgtaccgagttttccggtcgaactcaaaaccagtc
acgtttgctggaggtccaaggccgacagacgatgtcatgcacatcttggattgcctggaa
aagataaagaagtggcatgcacatccaagtgttcttgttatgggctatacatcatttctt
acattaatgagggaagatgcaaaatttgctcacagaaagtacatggccaaagttttgcgc
caaagccccggtatcttaatattggatgaggggcacaaccccaggagtactaagtccagg
ctgaggaaggttttgatgaaagttgaaacagacctcagaatactcctctcaggtaccttg
tttcaaaataatttctgtgaatatttcaatactctttgtttggcaagacctaggtttgtg
aatgaagtgttgaagaaactagatcccaaattcaagaggaagaaaagaaaagctccacac
ttgcaagaagctcgggcaaggaaattctttttagataagatagctcggaaaatcgatgca
ggtgatggagaagagaggcaggaaggtctgaacatgctaagaaatatgacaagtgcgttt
attgatgtttatgaaggtggaagtaaggatggccttcctggtttacaaatttacacctta
ctaatgaacacaactgacatacagcaacaaattttgaataaacttcataagataatggct
aaataccctggatatccccttgagttagagctcctcataactcttggttcaatccatcct
tggttagtaaaaactgcggtttgtgctagcaaatttttcagtgagagggatctgatggaa
ctagaaggatacaaatttgatttgaggaaaggttcaaaggtgatgtttgttctgaatctt
gtgtaccgtgtcgtcaagaaggaaaaaattctaatcttctgccacaacattgcacccgtc
aaactattcatagagctgtttgagaacgtatttaggtggaagagaggccgagaaatcttg
gccctcacaggggaccttgagctattcgaacgaggaaaagtgatggataagtttgaagat
cccttagggccatccaaagtcttgcttgcttcaattactgcttgcgcagaaggcattagt
ttgactgcagcttcacgagtcatcttactagactccgagtggaatccttcgaagacaaag
caggccatcgctcgagctttccgtccaggccagcttaaggtggtctatgtctatcaacta
ctggtaactggcacattggaagaggacaagcacaagagaactacatggaaggaatgggtg
tcaagtatgattttcagtgaggcgtttgtggaggatccttctaaatggcaagcagaaaag
attgaagatgaagttcttagggagatggtggaggaagatagagtcaaatcgtttcatatg
attatgaaaaacgagaaggcttctactgtgatcagagaaaaggattag
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integrated database retrieval system
