Cucurbita moschata (crookneck pumpkin): 111447076
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Entry
111447076 CDS
T05248
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 18
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cmos03009
]
111447076
Enzymes [BR:
cmos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111447076
Ribosome biogenesis [BR:
cmos03009
]
Eukaryotic type
Pre-60S particles
Helicases
111447076
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
GramPos_pilinD1
Motif
Other DBs
NCBI-GeneID:
111447076
NCBI-ProteinID:
XP_022941834
UniProt:
A0A6J1FPL3
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All DBs
Position
Unknown
AA seq
580 aa
AA seq
DB search
MDGGDGNQALTSTRFSDLEPPLSAPVLEALAQLGFEFCTPVQAATIPLLCSHKDVAVDAA
TGSGKTLAFVVPVVEILRRCSSSRPKPHQVMGIIISPTRELSSQIYSVALPIVSTLSNIK
SVLLVGGADVKEDMNKIEEEGANLLIGTPGRLFDMMERMENLDFRNFEVLILDEADRLLD
MGFQRQITSIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPIRVEVRAETQLAPSRTPS
SLHIEYLECEADKKSTQLVDILVKNKSKKIIVYFMTCACVDYWGVVLPQLTLLKGFSLIP
LHGKMKQTAREKALASFVSLSSGVLLCTDVAARGLDIPGVDCILQYDPPQDPNVFVHRVG
RTARLGREGNAIVFLLPKEEAYIEFLSIRRVPIQERICCSDALDIVPQIRTAAKKDRDVM
EKGVKAFVSFIRAYKEHHCSFIFRWKELEIGKLAMAYGLLQLPLMSEVKRHSLSTEGFVP
IEDINFEEVKFKDKSREKQRKKNLQAKKEAQKQQPKPEPKKDPNAAAPILRKKTARQRRA
VQTAEDEDELTREYRLLKKLKKGTIDEAEYAKLTGTEELL
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atggacggcggcgatggaaaccaagccttgaccagcacccggttctccgacctcgaacct
cccctctcagcacctgttctagaggcgttagcccaattaggttttgaattctgtactcca
gttcaagccgccacaattccgttgctatgcagccacaaggacgtcgccgtcgacgccgcc
actggttcggggaaaaccctagcgtttgtagttccggtcgttgaaatcctccgacgatgt
tctagcagtcgccccaaacctcaccaggtaatggggattataatttccccaaccagggag
ctttcctcacaaatttacagtgttgctcttcctatcgtttctacattgtcgaatatcaaa
tcggtgcttctcgttggaggcgccgatgtaaaagaagacatgaataagatagaagaagaa
ggtgcaaacttgttgattgggaccccaggaaggctgtttgatatgatggaacgtatggag
aacttggattttcggaactttgaggttctgatattggatgaagcagataggctcctggac
atgggatttcaaaggcagataacttcaattatatctcgtttgcctaagcttcgtaggact
ggtcttttttcagctacacaaactgaggcagttgaagaactgtctaaggcagggctaagg
aatcctatcagggtcgaagtaagggcagaaacacaacttgcaccttcgagaactccatct
agtcttcatattgagtatttggaatgtgaagcagacaagaaatccacccaacttgtcgac
attcttgttaagaacaaatccaaaaaaatcatagtatacttcatgacttgtgcatgtgtt
gactattggggagttgttctaccacagcttacccttttaaaaggattttccttgatccct
ctacatggaaagatgaaacagaccgcccgggagaaagcactagcctcatttgtatccctc
tcaagtggtgttcttctatgcacagatgttgcagcccgtgggcttgacattcctggcgtt
gattgtatactgcagtacgatcctcctcaagatcctaatgtatttgtacatagggttggt
cgcactgctcgattgggtagagaaggaaatgccattgtttttcttttgccaaaggaagaa
gcttatatagaattcctttccataagaagggttcccattcaagagagaatttgttgtagt
gatgccttagatatagttccacagatacgaactgcagcaaaaaaggatcgtgatgtcatg
gagaagggagtcaaggcatttgtttcttttatacgtgcttataaagagcaccactgctct
ttcattttcaggtggaaagaacttgaaatagggaagttggccatggcgtatggtttgttg
cagctgcctttgatgtccgaggtgaaacgccactccctttcaaccgagggttttgttccc
attgaagatattaactttgaggaggttaaattcaaggataaatctcgagaaaaacaacgg
aagaaaaacctccaagctaagaaggaagcgcaaaagcaacagcctaaacctgagccaaag
aaagatccaaatgccgcagctcccatcctaagaaagaaaacagctcgacagagacgtgct
gtacagacagctgaagacgaggatgagttgacgcgcgaatatcgattgttgaaaaaactc
aaaaagggaaccatcgatgaagctgaatatgccaagctaactgggaccgaggagctactg
tga
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