Cucurbita moschata (crookneck pumpkin): 111447991
Help
Entry
111447991 CDS
T05248
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111447991
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmos03021
]
111447991
03041 Spliceosome [BR:
cmos03041
]
111447991
03036 Chromosome and associated proteins [BR:
cmos03036
]
111447991
Transcription machinery [BR:
cmos03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
111447991
Spliceosome [BR:
cmos03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
111447991
Complex B
111447991
Complex C
U2 SnRNP specific factors
111447991
Chromosome and associated proteins [BR:
cmos03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
111447991
TFTC complex
111447991
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
111447991
NCBI-ProteinID:
XP_022943184
UniProt:
A0A6J1FTJ2
LinkDB
All DBs
Position
Unknown
AA seq
1213 aa
AA seq
DB search
MYLYNLTLQRATGIVSAINGNFSGGKTQEIVVARGKVLDLIRPDDSGKIQTLLSVEIFGA
IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNKDKNVFDKIHQETFGKSGCRRIVPGQYL
AVDPKGRAVMIGACEKQKLVYVLNRDTVARLTISSPLEAHKSHTIVYSICGIDCGFDNPI
FAAIELDYSEADQDFTGVAASEAQKHLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSASMHKQKTMFFFLLQ
TEYGDIFKVTLEHNNDSVKELKIKYFDTIPVTASMCVLKSGFLFAASEFGNHSLYQFQAI
GDDADVESSSATLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPIMDMKVINLFEEETPQ
IFTLCGRGPRSSLRILRPGLAISEMAVSELPGVPSAVWTVKKNINDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQILSVQSVSSAPESLLFLEVLASVGGEDGADHPASLFL
NAALHSGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFSVILRGRRAILCLSSRPWLGYIH
QGHFLLTPLSYETLEYASSFSSDQCAEGVVAVAGNFLRVFTIERLGETFNETVIPLRYTP
RKFVLHPRRKLLVLIESDQGAFTAEEREAARKECFEAAGTGENGNGKMEMENGGDDEDKD
DPLSDEHYGYPKAESEKWVSCIRVLDPRSATTTCLLELQDNEAAFSVCTVNFHDKEYGTL
LAVGTAKGLQFFPKRSLVAGYIHIYRFLEDGKSLELLHKTQVEGVPLALAQFQGRLLAGI
GSVLRLYDLGKRRLLRKCENKLFPNTIVSIQTYRDRIYAGDIQESFHYCKYRRDENQLYI
FADDSVPRWLTASYHVDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLN
GAPNKVEEIIQFHIGDVVTSLQKASLIPGGGECILYGTVMGSLGALHAFTSRDDVDFFSH
LEMHLRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPLDLQRKIADELDRTPGE
ILKKLEEVRNKII
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgtatctttacaacctcactttgcaacgagctaccgggattgtttcggctataaatgga
aatttctccggtggaaaaacgcaggagatagttgtggccagagggaaggtcctggatctc
attcgtcccgatgatagtggtaagatccaaactctgctttccgttgaaatttttggtgcg
attcggtctttagctcaattcaggcttactgggtctcagaaagattatattgttgttggg
tctgattcgggtcgaattgtcattctcgagtacaataaggataaaaatgtgtttgataag
atacatcaggagacttttgggaagtctggttgtcgtcggattgttccggggcaatatttg
gccgttgatcctaaagggagggctgttatgattggggcttgtgagaagcagaagctcgtt
tacgtgttgaatagagatactgtagcgaggcttactatttcttcgccattggaggctcac
aagtcacatacgatagtctattcaatttgtggaattgattgtggatttgacaaccctata
tttgctgcaattgagttggattactcggaggcagatcaagattttactggggtggctgca
agtgaggcccagaagcatttaactttttatgaacttgatcttggtctaaatcatgtctct
aggaagtggtcagaacctgttgataatggtgcaaatatgctagttactgttcctggtggc
ggagatggtccaagtggagtgttagtttgtgctgaaaattttgttatttataagaatcag
ggacatccagatgtgagagctgtcattcccaggcgtgcagacttacctgctgaacgtggt
gtgcttatagtttcagcatctatgcataagcaaaaaacaatgtttttctttcttttacag
acagagtatggagatatttttaaggttactttggaacacaacaatgacagtgtcaaagaa
ctgaagattaagtatttcgatacaattcccgttacagcttcaatgtgtgtgttgaaatct
ggattcctatttgctgcctcagaatttggaaatcactctctataccagttccaagcgata
ggggatgatgctgatgttgagtcttcctctgctactctgatggaaactgaagaaggtttt
cagcctgtctttttccagcctaggaggcttaaaaatcttgttagaattgatcaagtagag
agtttaatgcctataatggacatgaaagtcattaatctttttgaggaagaaacaccccaa
atatttactctctgtgggcgtgggcctcgatcatctctgcgaatattgagacctggttta
gccatcagtgaaatggctgtgtcagaacttcctggtgtccctagtgccgtttggactgtg
aaaaagaacatcaacgatgagtttgatgcatacattgttgtgtcatttgcgaatgcaaca
cttgttctttccattggtgagacagtcgaagaagtcagtgatagtggatttcttgacact
accccttcccttgctgtttctttgataggtgatgattcacttatgcaagtccatccgaat
ggcattaggcatattagggaagatgggcgtattaatgaatggagaactccaggtaagagg
accattgttaaggttggctctaataggcttcaagtggtgattgccctgagtgggggagaa
cttatttattttgaggtagacatgactggtcagttgatggaagtggaaaagcatgaaatg
tctggagatgttgcctgtttggacattgccccagtacctgaagggagacaacgttctcgt
ttcctagcagttggttcttatgacaacacaatacgaattctatcactggatcctgatgac
tgtatgcagattttaagtgtgcaaagtgtttcttcagctccagaatctctcctatttctt
gaagttctggcatcagtaggtggggaggatggtgctgatcatcctgctagccttttctta
aatgctgctttgcattctggggttttattcagaacagtagtagatatggtgacaggtcag
ctctctgattcccgatccaggttcttaggtctaagagcacccaaactgttttctgttatt
ttgaggggtaggcgtgcaattctttgcctctcaagtagaccttggcttggttatattcat
caaggacattttcttttgacgcctctatcatatgaaactcttgaatatgcttcctctttt
tcgtcggatcagtgtgctgaaggtgtggttgctgtagcaggaaatttcttgagggttttt
accattgagagattgggagaaacatttaatgaaacagttattccgctcaggtacactcca
aggaagtttgtgcttcatcctaggagaaaactattggttttaattgagagtgatcaggga
gcattcactgcagaagagcgagaagctgctagaaaagaatgttttgaggctgcagggact
ggagaaaatgggaatggcaaaatggaaatggagaatggaggagatgatgaggataaggat
gatcctttatctgatgagcattatggttacccaaaggcagagtccgaaaaatgggtttct
tgcatccgagttcttgaccctcggtcagccaccacaacttgtctgctggagcttcaagac
aatgaagcggcattcagtgtttgtactgtgaatttccatgacaaggaatatggaactctt
ttagctgttggtactgcaaaagggctgcagtttttccctaaacgaagtttagttgctgga
tatattcatatttatcgttttctagaggatggaaaatccctcgagcttttgcacaagaca
caagtggaaggtgttcctctcgctttagctcagttccagggaagattactagcggggata
ggatctgtgctcagattgtatgatttggggaagagaagattgcttaggaagtgtgaaaat
aagttattccctaatacaattgtgtccattcagacatatcgtgatcgaatttatgctggt
gacattcaggagtcattccattattgcaagtacaggcgggatgaaaatcaactgtacata
tttgcggatgattctgttcctagatggcttacagcatcataccatgtggattttgatacc
atggctggtgctgacaagtttggaaatatctattttgtgcggttaccacaagatgtctcg
gacgagattgaagaagatccaacgggtggaaagataaaatgggagcagggaaagcttaac
ggggcacctaacaaagtcgaggagatcatacagtttcatattggtgacgtggtcacatca
ttgcagaaggcgtctttgattccagggggtggagaatgcattttgtatggtacagtgatg
ggaagcttgggggcattgcacgctttcacctcccgtgatgatgttgatttcttttctcac
ttggagatgcatttgagacaggaacatccacctttatgtggaagagatcacatggcttat
agatcggcttattttcctgttaaggatgtgattgatggggatctgtgcgagcagttccca
accctccccctggatttgcagagaaaaattgccgacgaattggaccgaactcccggagaa
atactgaagaagcttgaagaagtacgaaataagatcatttaa
DBGET
integrated database retrieval system
