Cucurbita moschata (crookneck pumpkin): 111448456
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Entry
111448456 CDS
T05248
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111448456
03041 Spliceosome [BR:
cmos03041
]
111448456
03036 Chromosome and associated proteins [BR:
cmos03036
]
111448456
Enzymes [BR:
cmos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111448456
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111448456
mRNA cycle factors
Common to processing body (P body) and stress granule
111448456
Spliceosome [BR:
cmos03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
111448456
Chromosome and associated proteins [BR:
cmos03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
111448456
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Mcm-like_N
Motif
Other DBs
NCBI-GeneID:
111448456
NCBI-ProteinID:
XP_022943844
UniProt:
A0A6J1FVF6
LinkDB
All DBs
Position
Unknown
AA seq
621 aa
AA seq
DB search
MRTSWADLAASSAADNVAAGSSANNCSAGTTTAPGRSAYVPPHLRNRPASSDPPAAANSG
PAVGNDRSGNVGPRWGGPRNDYNRSGYGGGSRGGGWGNRGGGWDRGRGDREVNPFGDDDD
TEQEFGEQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNQNIRRCKYVKPTP
VQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMKGQNMQRPARGARTAYPLALIL
SPTRELSMQIHEEARKFSYQTGVRVVVAYGGSPINLQLRDLERGADILVATPGRLVDLLE
RAKVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPREIQRL
ASDFLSSYIFLAVGRVGSSTDLIAQRVEFVHESDKRSHLLDLLHAQRSNGVQGKQSLTLV
FVETKKGADALEHWLCLNGFPATTIHGDRTQQEREQALRSFRSGNTPILVATDVAARGLD
IPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNENNSSIARSLADLMQESNQE
VPDWLSRFAARSSYSGGRNRRSGGGRFGSRDYRRDSSFSRGGSDYYSGGSNNNSNSGGYG
GVSGGYGGGGYGGSGVTSAWD
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgcgaacttcgtgggcagatttggctgcaagctctgctgctgataatgtagctgctggt
tcttctgctaacaactgcagtgctggaactacaacagcgcctggccgatcagcctatgtt
ccaccacatcttcggaatcgcccagcctcttccgatccacctgctgcagcgaatagtggg
cctgctgtgggaaacgatcgttctggaaatgtagggccccgctggggtggtcccaggaat
gattataatcgctctgggtatggtggtggcagccgtggaggtggatggggaaatagagga
ggtggatgggatcgcgggaggggggatcgtgaagtgaacccatttggagacgatgatgat
acagagcaagaatttggagagcaagaaaatactggtataaattttgatgcatatgaagat
attcctgtggaaactagtggtgaaaatgtacctcctccggtgaatacatttgctgaaatt
gatttgggtgaagcacttaatcaaaacattcggcgatgcaagtatgtaaaaccaactccc
gttcagcggcatgctattcccatctccctaggagggagagacttgatggcttgtgctcag
actggatctggaaagacagctgctttttgtttccccattatcagcggcataatgaagggc
cagaatatgcagagaccagctcgaggtgcacgtacagcatacccacttgcccttattctc
tccccgactagggagctttcaatgcaaatacatgaagaagcaaggaaattctcttatcaa
acaggtgtcagagtggtggttgcttatgggggttcaccaatcaacctacagctacgtgat
ctagaaagaggtgctgatattcttgttgcaactccgggaaggttggtagatttgcttgaa
agggctaaagtttcactgcagatgataagatacttggcccttgatgaagcagatcgcatg
ttagatatgggatttgagccccaaatcaggaaaatagtagaacaaatggacatgcctcct
cctggtgtaaggcagactatgctgtttagtgcaacttttccaagggagattcagagactg
gcctctgattttctttcaagctatatatttctggctgttggaagagtgggttcaagtact
gatctaattgctcaaagagttgaatttgttcatgaatctgataagagaagtcatttattg
gaccttcttcatgcacagaggtcaaatggtgtgcagggcaagcaatctcttactttggtt
tttgtggagacaaagaagggagctgatgctcttgaacattggttatgccttaatggtttt
cctgccactaccattcacggtgatagaacacaacaggaaagagaacaagcattgaggtca
tttagaagtgggaacacgccaattttggtggcaactgatgtagctgcccgtgggcttgac
attcctcatgttgcacatgtggtgaatttcgatctccctaatgacattgatgattatgtt
catagaattggacgaacggggagagctgggaagactggtttagctactgccttctttaat
gagaacaattcgtccatagcaaggtccttggctgatctgatgcaagaatctaatcaagaa
gttcctgattggctatcacgatttgctgccaggtcttcatacagtggagggagaaatcgt
cgttctgggggaggccgatttggtagccgtgactatcgaagggattcctctttcagcaga
ggtggttctgattattatagtggaggcagcaacaacaatagcaacagtgggggttatggt
ggtgtttccggtggatatggagggggagggtacggtggttcaggggtgactagtgcatgg
gactaa
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