Cucurbita moschata (crookneck pumpkin): 111448793
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Entry
111448793 CDS
T05248
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111448793
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111448793
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111448793
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111448793
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
111448793
NCBI-ProteinID:
XP_022944310
UniProt:
A0A6J1FYL0
LinkDB
All DBs
Position
Unknown
AA seq
663 aa
AA seq
DB search
MSGLLNSSLNGSASNVPDGAGRSFATSFSGQSGAASPVFHHSGTMQGLHNIHGSFNIQNM
SGALASRNSTINNVPSGGVQQPTGTLSSGRYAASNNLPVALSQLSHGGSHGHLGVANRGG
ISVVGNPGFSSSTNAVGGSIPGILSSSAGIGNRNTVPGLGVSPILGNSGPRITTSMGNMV
SGGNIGRSITSGGGLSLPGLASRLNLGANSGSGSLSVQGQNRLMSGVLPQGSQQVISMLG
NSYPSAGGPLSQNHMQSVNSLSSLGMLNDVNANDNSPFDINDFPQLTSRPSSAGGPQGQL
SSLRKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDMHQTEQHENSVPMMQSQQF
SIGRSAGFSLGSTYTHRPQQQQQHSSAVSNSTVSFSPANNQDLLHLHGSDIFPSSHTASY
HQQSSGPPGIGLRPMSSPNSASGMGYDQLIQQYQQHHGQSQFRFQSMSGVNQSFRDQGIK
SMQTAQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSAENLHKTFGSPWSD
EPAKGDPDFNVPQCYLIKPPPTLHQGYFSKFTLETLFYIFFSMPKDEAQLYAANELYNRG
WFYHKEQRFWFIRVSNMEPLVKTNTHERGSYLCFDPQTFETVRKDNFVLHYEMVEKRPAL
PQH
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtttacttaattcatctcttaatggatcagcttcgaatgttccagatggtgct
gggcgatcttttgctacctcattttctggtcaatctggcgcagcctcccctgtttttcat
cactctggaactatgcaagggttgcataacattcatggaagcttcaatattcagaacatg
tcaggtgcactagcttcgagaaattcaacgattaataatgttccatctggtggggtgcag
caacctactggaacactttccagtgggcgttatgctgcatcaaacaaccttcctgttgct
ctctcacagttgtctcatggcggctctcatgggcatttaggagttgcaaatagaggaggt
ataagtgttgtaggaaatcctggatttagtagcagcacaaatgcagttggtggttctatt
cctgggattctgtctagttctgctggtattggtaatcgaaatactgttccagggttgggt
gtatctccaattttgggaaattcaggtcctcggatcacaacttcaatgggaaatatggta
agtggaggcaacataggaaggagtataacttctggtgggggattgtcattacctggtctt
gcttctcgtctaaaccttggtgctaatagtggatctggaagtttatctgtgcaaggacaa
aaccgtttaatgagtggtgtgcttccacaaggatctcaacaggtcatttctatgttgggc
aattcttatcctagtgctggaggtcccctttcccaaaaccatatgcagagtgtgaatagt
ctgagttctctggggatgttgaatgatgtgaatgctaatgacaattctccttttgatatc
aacgatttccctcagttgactagtcgtccaagttctgcaggaggacctcaagggcaatta
agctcgctgagaaaacaaggccttagtcctattgtccaacaaaaccaggagttcagcatt
cagaatgaagattttccagcgttacctagatttaaaggtgggaatgctgattatggcatg
gatatgcatcagacagaacaacatgaaaattctgtgcctatgatgcagtcgcagcagttc
tctattggaaggtctgctggatttagcttagggagtacatatacacatcgaccccagcag
cagcaacagcattcttcagcagttagtaacagcacggtctccttttcacctgcaaataat
caggatctccttcatttgcacggatcagatatattcccgtcatcacatactgcatcctac
caccagcagtctagtgggcctcctggtattggtttaagaccaatgagctctcctaattca
gcttctggaatgggttatgaccaacttatccagcagtatcaacagcaccacggtcaatct
caattccgatttcaaagtatgtctggtgttaatcagtcatttagggatcagggcattaaa
tctatgcagacagctcaatcttctcccgatccatttggtttacttggtttgttaagtgta
ataaggctgagtgatccggatcttgcatccctcgcactgggaattgatttgaccacgtta
ggtttaaatttgaattcagcagagaatcttcataagacttttggctccccatggtctgat
gagcctgctaagggtgatccagatttcaatgtaccgcagtgctatcttattaaaccacca
cctacactacatcaaggatacttctcgaaatttactctggagacactgttttatatattt
ttcagcatgccaaaagatgaagctcagttgtatgctgcaaatgaactttacaatagaggc
tggttttatcacaaagaacaacgattctggttcattcgtgtctctaacatggaaccactt
gtgaagactaacactcacgagcgaggatcgtacctctgtttcgacccccaaacatttgaa
actgtccgcaaggataattttgtccttcactacgagatggtagaaaagagaccagcacta
ccgcaacattga
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