Cucurbita moschata (crookneck pumpkin): 111449254
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Entry
111449254 CDS
T05248
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111449254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111449254
03012 Translation factors [BR:
cmos03012
]
111449254
Enzymes [BR:
cmos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111449254
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111449254
Translation factors [BR:
cmos03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111449254
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
Helicase_C
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
NACHT
Dicer_dimer
T2SSE
ABC_tran
Myosin_head
AAA_11
Motif
Other DBs
NCBI-GeneID:
111449254
NCBI-ProteinID:
XP_022944845
UniProt:
A0A6J1FZ75
LinkDB
All DBs
Position
Unknown
AA seq
1180 aa
AA seq
DB search
MPYPHLRPSLQFCKAPKSSHSFPHFAMKDRSPSSNAAVYVPPHLRLRFVLTSSNHSPTVS
GVHCKLRQAEAPAPPSLHAPSQELFDSAYHNGAPVESQDCNFEFSNQSGVSPAVNIDLWK
RKLALLLRDKDMQEVVSREKKDRHDFEQLAALASSMGLFSHLYAKVAVFSKVPLPNYRFD
LDDRRPLREVSLPSWLLRRVDEHLGEFLSQKSRFEGFQDISDYRSISSAGIATDEGLFEQ
PVLQASSKAVMEQILWRRSLHLREQQHAWQSSPEGREMLEFRKSLPAYKEKDAILTTISQ
NQVIIISGETGCGKTTQVPQFILESEVESLRGAGCSIVCTQPRRISAMSVSERVASERGE
KLGESVGYKVRLEGIKGRETHLLFCTTGILLRRLLVDRNLKGITHVIVDEIHERGMNEDF
LLIVLKDLLPRRPELRLILMSATLDAELFSSYFGGAQIIHIPGFAHPVRTHFLEDILEMT
GYRLTPYNQIDDYGQEKTWKMSKQAPRKRKTQIASSVRETLMAADFKEYSLQTQESLSSW
NPDCLGFNLIEYLLVRICESEIPGAILVFMTGWDDISSLKEKLQSHPLLGDPTRVLLLAC
HGSMASSEQRLIFIEPDKGMRKIVLATNIAETSITINDVVYVLDCGKAKETSYDALNNTS
CLLPSWISKVSAQQRRGRAGRVQPGECYHLYPRCVFNAFAEYQLAEILRTPLQSLCLQIK
SLKLGSISKFLSRALQSPEPLAVQNAIEYLKIIGAFDENENLTVLGRYLIMLPMEPKLGK
MLILGAILNCLDPILTIVAGLSVRDPFLMPLEKKDAAEAAKSQFSQDHSDHLAIIRAYRG
WKEAERNFGGYDFCWKNFLSVQSMKAIDSLRKEFFSLLRDTGLVDGYLDSYNAWSLDEHL
IRAVICYGLYPGVCSIVHNEKSFSLKTMEDGQVLLYSNSVNARESRIPFPWLVFNEKIKV
NSIFLRDSTAISDSMLLLFGGNISKGDHDGHLKMLSGFLEFFMKPDVAEMYQKLRLKLEE
LIQKKLLNPKMDLHSHHELLSAVRLLISEDQCEGRFVFGRQIFQQPSMASTTLAAAPTSV
SRTESRPGGDNSKSQLQTLLTRAGYAAPTYKTMQLKNNQFRATVEFNGLQIMGQPCTNKK
NAEKDAAAEALEWLMGGTRLGHEYINQMSLMLKRNKKDHN
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgccatatcctcatcttcgtccttctcttcaattctgcaaagctccaaaatcctcccat
tcttttcctcatttcgcaatgaaggaccgctctccttcctccaatgccgccgtctacgtc
cctcctcacctccgtctccgcttcgttcttacttcttccaatcattcccctactgtttcc
ggtgttcactgcaagcttcgccaggcggaggctcctgctccgccttctctgcatgctcct
tctcaggaactgttcgattccgcctatcacaatggggctccggtggagagtcaggattgt
aattttgagttttcgaatcaatcgggcgtttcacctgccgtcaatattgatttgtggaaa
agaaagttggcattactcttacgtgacaaggacatgcaagaggtagtttcaagggaaaaa
aaagatagacatgattttgagcaattagctgctttggcgagtagcatgggactttttagc
catctatatgccaaagttgcggtttttagtaaggtcccattgccaaactacagatttgat
ttggatgatcggcgtccactgagggaggtctctttaccttcttggttgcttagaagagta
gatgaacatctgggagagtttctctctcagaagtctaggtttgaaggttttcaagatatc
tctgactatagatcaattagcagtgctggcattgctacagatgaagggctttttgagcaa
cctgtgctacaagcatctagtaaggctgtgatggaacaaattctttggcgaagaagtttg
catctgcgtgaacaacagcatgcttggcagtcatctcctgaaggaagagaaatgctggag
tttcggaaaagtctccctgcttacaaggagaaggatgcaatattgaccacaatctcacag
aatcaggttattattatatcaggtgaaactggttgtggcaagactacgcaagttccccaa
ttcattttggaatcagaagtagaatcacttcgtggagctggttgcagcatcgtatgtaca
cagccaagacgaatatctgctatgtctgtctctgagagagtcgcttctgagagaggggag
aaattgggtgaatctgttggttataaagtgcggctggagggtataaaggggagggagact
catctactcttttgtaccacgggcatcttgttgagaagattgttggttgatagaaatttg
aaaggcataactcatgttattgttgacgaaatccatgaacgtggaatgaatgaagatttt
ctgcttattgtcctgaaagatctccttcctcggcggccagaattgaggttgattctaatg
agtgcaactttagatgcagaacttttctcatcctactttggtggtgctcaaattattcac
attccgggattcgcacaccctgtccgaactcattttctggaggatattctagaaatgacg
ggttacagattaactccatacaatcaaatagatgattatggtcaagagaagacatggaaa
atgagcaaacaagcaccaagaaagaggaaaacccagattgcctcctctgttcgggaaaca
cttatggcagctgattttaaggagtacagtcttcaaactcaggagtctttatcgtcttgg
aatcctgattgtcttggttttaatctcattgaatatcttctagtccgcatatgtgagagt
gaaatacctggagctattcttgtttttatgactgggtgggatgacatcagttctctgaaa
gagaaacttcagtctcaccctttattaggagatccaactcgtgtattgttgttggcttgc
catggttcaatggccagttcagagcagaggttaatatttatcgaacctgacaagggaatg
agaaagatagtgcttgcaacaaatattgctgagacaagtatcactataaacgatgttgtg
tatgttctggactgtggaaaggcaaaagaaacatcgtatgatgctttaaataacacttct
tgtttgcttccctcatggatatccaaggtttctgctcaacaaagaagaggaagggctggc
cgtgttcaaccaggcgaatgctatcatctataccctaggtgtgtgtttaatgcttttgcc
gagtatcagctggcagaaattttgagaacacctttacagtccctctgcttgcaaataaaa
agcctaaagcttggaagtatatcgaagtttctatctagggctttgcagtcaccagagccc
ctagcggttcagaatgctattgaatatttgaagatcattggagcatttgatgagaatgaa
aatcttactgtattaggtcgttatttgattatgctcccaatggagccaaaactgggaaag
atgttgatattaggtgctattctcaattgtttggatccaattttgaccattgttgctggc
ctcagtgtgagggaccctttcctaatgccactggagaagaaggatgctgcagaggctgca
aagtcccaattttcacaagatcatagtgatcaccttgctatcatccgggcttatagggga
tggaaagaagcagagaggaactttggtggatatgacttctgttggaagaacttcctttct
gtacaatcaatgaaggctattgattcactgaggaaggagtttttctccttgcttagagat
actggcttggttgatgggtacttggactcctacaatgcttggagtcttgatgaacatctc
atacgtgcagttatttgctatggcctatatcctggagtttgctctattgtgcataacgag
aagtcattttctctcaaaactatggaggatggccaggtgcttctctattcgaactcggtc
aacgcccgagagtcgcggattccatttccatggctagttttcaatgagaagataaaagtg
aactctattttccttcgagattcaacagctatttctgactcaatgctgcttctctttggt
ggaaacatctcaaagggtgatcatgatggacacttgaaaatgttgagcggttttttggaa
ttttttatgaaacctgatgtagctgagatgtatcagaaattaagattgaaacttgaagag
cttatacagaagaaactactaaatccaaagatggacttgcactcccaccatgagctccta
tctgctgtacgcttgcttatttcagaagatcagtgtgaaggtcgattcgtttttggccgc
cagatctttcagcagccctccatggcatctactactttggcagcggcaccaacttctgtt
tcaagaacggaaagtcgacctggtggtgacaattctaaaagtcagctccagacattacta
acaagggctggatatgctgcacccacctataagactatgcaattgaagaacaatcaattt
cgagcaactgtggaatttaatggactgcaaattatgggacaaccttgtaccaacaaaaag
aatgcagaaaaggacgcagcagctgaggctcttgagtggttgatgggtggaactcggttg
gggcacgagtatatcaatcaaatgtctctgatgctaaaaaggaacaagaaggatcataac
taa
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