Cucurbita moschata (crookneck pumpkin): 111449712
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Entry
111449712 CDS
T05248
Name
(RefSeq) pre-mRNA-processing factor 17-like isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111449712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmos03041
]
111449712
Spliceosome [BR:
cmos03041
]
Complex C
Other components
Step II factors
111449712
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
eIF2A
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
111449712
NCBI-ProteinID:
XP_022945494
UniProt:
A0A6J1G146
LinkDB
All DBs
Position
Unknown
AA seq
581 aa
AA seq
DB search
MDLLQSYTDQNDDDGSPKQLTSSPEASPPRLLPSKTSAPKVDDTMLALTVANAYRTLSKP
IDPTQHLVAFNPTYDQLWAPILGPSHPYAKDGIAQGMRNHKLGFVEDASIEPFVFDEQYN
TFHKYGYAADPSASAGNNFIGDMEALQKNDAISVYNIPQHEQKKRKIEKKKEMSESEDVE
MELNPAEVDNPASDVWLMKNRKSPWSGKKEGLQTELTEEQKKYAEEYAKKKGEEKGGEKG
EVTADKSTFHGKEERDYQGRSWIAPPKDAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFP
KHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSQAVRDISFCNDGSKFLTAGYDKKIKY
WDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTGQITQEYDQHL
GAVNTITFVDNNRRFVTSSDDKSLRVWEYGIPVVIKYISEPHMHSMPSISVHPNTNWLAA
QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK
TCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atggatcttctccagtcgtacacagatcaaaacgacgatgacggaagccctaaacagctt
acatcttcgccggaagcctctccgccgcggctcctcccctccaaaacctcggcgcccaag
gttgatgatacaatgttggctcttacggtggccaacgcctacaggacattatctaagccg
atagacccaactcaacatctagttgccttcaaccctacctacgaccagctctgggcgccc
attcttgggccatctcatccctatgcgaaggatggcattgcacagggcatgagaaaccat
aagctaggctttgttgaggatgcgtccattgagccgtttgtatttgatgagcagtacaac
actttccacaaatatggatatgctgctgacccttcagcttctgctggaaacaatttcatt
ggggatatggaggctttgcagaagaatgatgccatatccgtgtataacattccacagcat
gagcaaaagaagcggaagattgagaagaagaaagaaatgagtgagagtgaggatgtggaa
atggagttgaacccggctgaagttgataacccggcgagtgatgtgtggttgatgaagaat
aggaagagcccttggtctgggaagaaggaaggtctgcaaactgagctaactgaggagcag
aagaaatacgcagaagagtatgcaaagaagaaaggtgaagagaaaggtggtgagaaggga
gaagttacagcagataagagtacttttcatggtaaagaggagagggactatcagggtaga
tcttggattgcaccaccgaaggacgccaaggccacgaatgatcattgttatataccaaaa
agattggtgcatacatggagtgggcacacaaagggtgtatctgctattagattcttccct
aaacatggtcatttgattctttcagcaggtatggataccaaggtgaagatatgggatgtg
ttcaattctgggaaatgtatgagaacctacatgggtcactctcaggcagttcgggatatt
tcgttttgtaacgatgggtccaagttcttgactgctgggtatgataaaaagattaagtat
tgggatacagaaacagggcaagtgatatcaaccttctcgactgggaaaattccttacgta
gttaagctcaatcctgatgatgataagcagaatattttgctggcagggatgagtgataag
aagatcgttcagtgggatatgaacacaggacagattactcaagagtacgatcaacattta
ggagcagtgaataccattacatttgtagacaataataggaggtttgtcacgtcaagtgac
gacaagtcgctccgtgtttgggaatatgggattcctgttgttattaagtatattagtgag
cctcatatgcattccatgccctccatatcggtacaccccaatacgaattggcttgcagca
cagagtttagacaatcaaattcttatctatagcactagggagagatttcagctaaacaag
aagaagaggtttgctggccacattgtggcaggatacgcttgtcaggtcaatttttcacca
gacggacgctttgttatgtctggcgacggtgagggtaaatgctggttttgggactggaaa
acctgcaaggtattcagaactctcaagtgtcacgaaggagtatgcattggctgtgagtgg
catccattagaacagagtaaagtagcaacgtgtggctgggatggactgataaagtattgg
gactag
DBGET
integrated database retrieval system
