Cucurbita moschata (crookneck pumpkin): 111450542
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Entry
111450542 CDS
T05248
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH15 chloroplastic
KO
K26077
ATP-dependent RNA helicase ISE2 [EC:
5.6.2.6
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmos03041
]
111450542
Enzymes [BR:
cmos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111450542
Spliceosome [BR:
cmos03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
111450542
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH3_ISE2
DSHCT
DEAD
ResIII
DEXQc_Suv3
Helicase_C
AAA_22
MMS21_N
Ski2_cyano_M
PhoH
AAA_16
Motif
Other DBs
NCBI-GeneID:
111450542
NCBI-ProteinID:
XP_022946499
UniProt:
A0A6J1G401
LinkDB
All DBs
Position
Unknown
AA seq
1180 aa
AA seq
DB search
MASPAINVFSIISPQHLWPPLSYPFPSSLCSRCSSPPIQAPRFCRLKPLPIFYPFPVPFR
PSVRSPRSIFSEKPQLSDVDEDEDEDEDEDEDEDEDEDDDDDVAAEEYDIDAFGELEQRY
DEVELSMEATEISIAPEEFKSQRVEKLLGEVREFGEGIVDVDELASVYNFRIDKFQRQAI
EAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARKRRLFYTTPLKALSNQKFREFRETFGD
SNVGLLTGDSAVNKDALVLIMTTEILRNMLYQSVGMASSESGLFHVDVIVLDEVHYLSDI
SRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHGKTELVTSTKRPVPLTWHFS
TKTSLLPLLDEKGKHMNRKLSLNYLQLHASGAKLYKDDGSRRRNPKRHGNEISNDRTSSL
SRQATLSKNDINSIRRSNVPQVVDTLWQLKSKDMLPAVWFIFSRKGCDAAVQYIEGKNLL
DDCERSEVELALRKFRIQFPDAVRESAVKGLLQGVAAHHAGCLPLWKSFIEELFQRGLVK
VVFATETLAAGINMPARTAVIASLSKRSNSGRTQLTSNELLQMAGRAGRRGIDKKGHVVL
LQTPYEGAEECCKLLFAGIEPLVSQFTASYGMVLNLLAGAKVTHTSEMDGTKAFQAGRTL
EEARKLVEQSFGNYVGSNVMIAAKEELVKIEKEIEVLNLEITDEAIDKKCRRLMSDVAYN
ELVELQEGLRSDKRQRTELRKEMELQRICAFKSLLQNLGDGQLPFLCLQYKDSEGVQHSI
PAVLFGNMDSSKLINMFPADNSLSGAEPNFGKNLDPGAESSYYVALGSDNSWYLFTEKWI
KTVYKTGFPNVALTKGDPLPREIMRTLLDKEGMKWEKLADSELGSLSCMEGSLETWSWSL
NVPVLNSLSENDELLQMSESYMESLTRYKEQRNKVSRFKKRISRTKGFREYKKILDMANI
IEDKIRQLKARYKRLSNRIQQIEPSGWKEFLQISNVIHEIRALDINSHVMFPLGETAAAI
RGENELWIAVVLRNKFLVQLKPTELAGVCASLVSEGIKIRPGRDNNYIFEPSRTVINMVN
FLEEQRNSLLDLQEKHGVNIPCSLDSQFSGMVEAWASGLTWREIMMDCAMDEGDLARLFR
RTIDLLAQIPKLPDIDPSLQRNASTASDVMNRSPISELAG
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atggcctctcccgccattaacgttttctccatcatttctccccaacatctctggccgcca
ttatcttatcctttcccctcctctctatgttctcgttgttcttcacctccgattcaggcc
ccgaggttttgtcgccttaagcctctccccatcttctatccttttccagttccatttcga
ccttccgtccgctctccgaggtccattttctctgaaaaaccccaactctccgatgtcgac
gaggatgaggatgaggatgaggatgaggatgaggatgaagatgaagatgaagatgacgac
gacgacgtggcagccgaggagtacgatatcgatgcgtttggagaattggagcagaggtac
gatgaagtggaattgtcgatggaagctactgaaatctccattgcacccgaggagttcaaa
tcgcagagagtcgaaaagcttctcggtgaagttagagagtttggagaaggaattgtcgat
gttgatgaactcgcttcagtttataatttccgtatcgacaagtttcagcgacaagccata
gaagcattcttgagaggatcgtcggtggtggtatcggcgcctaccagcagtggcaagact
ttgattgcggaggcggcggctgttgctactgtagccaggaagagacgattgttttacacg
actccactgaaagcattgtcgaatcagaagtttcgggagttccgtgagacgtttggagac
agcaacgttgggcttcttacgggagattctgcagttaataaagatgccctggttttgatc
atgactacagaaattttgcgcaacatgttgtatcagagtgttggaatggcctcatctgaa
agtggactttttcacgttgatgtaattgttttggatgaagttcattaccttagtgatatc
tctcggggcacagtgtgggaagagattgttatttattgcccaaaagaagtgcagcttatt
tgtctctctgcaacggttgcaaatccagatgagctagctggctggattggtcagattcat
gggaaaactgagttagtaacatcaacaaagcgtccagtaccattgacttggcatttctct
acaaagacctctttactacctctccttgacgagaaaggaaagcacatgaataggaagctg
tcgctcaattatcttcagcttcatgcttcaggagctaaattgtacaaggatgatggatca
agaagaagaaacccaaaaaggcatgggaatgagatcagcaatgaccgcactagcagcctg
tctagacaagctacactttcaaagaatgacataaactcaatccgccgttcaaatgttcct
caggtcgttgatacattgtggcaacttaagtcaaaagatatgctgcctgcagtttggttt
atatttagcaggaaaggatgtgatgcagctgttcagtacattgaaggcaaaaacctgtta
gatgattgtgaaaggagtgaagttgaacttgcattgagaaaatttcgtattcaatttcca
gatgctgtccgggaatcggctgtgaaaggacttctgcaaggagttgctgcacatcatgct
ggttgtctgcctctgtggaagtcattcattgaagagctgtttcagaggggacttgtgaag
gttgtttttgcgacagaaacattagctgctggaatcaacatgccagctaggacagcagtt
attgcatccctgagcaaacgaagcaatagtggtcgtacccagttaacctcaaatgaactg
cttcaaatggcagggcgagctggacgtcgaggtattgataaaaaaggtcatgtggtgctt
cttcaaactccatatgaaggtgctgaagagtgctgcaagctcctgtttgctggcatcgaa
ccacttgtttctcagtttacagcttcatatggaatggtattgaatcttctcgcaggtgca
aaggttactcatacgagtgaaatggatgggacaaaagctttccaagctgggcgaacgctg
gaagaagctaggaagttggttgagcagagttttggaaactatgttgggagcaatgtcatg
attgcagcaaaggaggagcttgttaaaatagaaaaagagattgaagtgctcaatttagaa
ataactgatgaagcaattgataaaaaatgcaggaggctcatgtcagatgtggcatataac
gagttagtagagctgcaggagggactgcgatcagataaacgtcaaaggacggaactacga
aaagagatggaattgcaaagaatttgtgccttcaagtctctgttacaaaatttaggagat
ggacagttgccctttttatgtttgcaatacaaagattctgaaggagtccaacattcaatt
cctgcagttctctttggaaacatggactcatcaaagctcattaacatgtttcctgctgat
aattctttgagtggtgcagaaccaaattttggtaaaaatctggacccaggtgctgaatca
tcttattatgtggctctaggttcagataattcttggtacctatttactgagaaatggatc
aaaactgtttataaaactggctttcctaatgttgctttaactaaaggggatcctttacct
cgggagattatgaggacacttctcgataaagagggaatgaagtgggagaagcttgctgat
tctgagcttggcagtttatcatgtatggaaggatctctggaaacatggtcatggagttta
aacgtgccagttctgaatagtctttctgaaaatgacgaactcttgcaaatgtctgaatca
tacatggaatctttaacaaggtacaaggagcaaagaaataaagtttcacgatttaagaaa
aggatatctagaacaaaaggattcagagagtacaagaagattttagatatggccaatatt
atagaggacaagattagacaattgaaggctagatataaacggctaagtaatcgaattcag
caaatcgaaccatcaggctggaaagagtttttgcagatcagcaatgtcatacacgaaatt
agagcactggatataaattctcatgtaatgttcccactcggagaaactgcagctgctatc
cgtggtgaaaatgagctctggattgccgtggttctaagaaataagttcttagtacaacta
aaacctacagagcttgctggtgtctgtgcaagtttagtttctgaaggcatcaaaatccgc
cctggaagagataacaattacatatttgagccatcaagaactgtaatcaatatggttaat
ttcctagaagagcagagaaattctctgttagatcttcaagaaaagcatggagtgaacata
ccatgttccttggacagccaattttcagggatggttgaggcttgggcctctggtttgact
tggagagaaataatgatggattgtgcgatggatgagggagatctggcacgcctctttcga
cgaacaatcgacttgttggctcaaattccgaagttgcctgatattgatccatctttgcaa
agaaatgcatcaactgcttctgatgtcatgaatcgttcaccaataagcgaattggctgga
taa
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integrated database retrieval system
