Cucurbita moschata (crookneck pumpkin): 111453335 Help Entry 111453335         CDS       T05248                                  Name (RefSeq) pre-mRNA-splicing factor SYF1   KO K12867   pre-mRNA-splicing factor SYF1 Organism cmos  Cucurbita moschata (crookneck pumpkin) Pathway cmos03040   Spliceosome Brite KEGG Orthology (KO) [BR:cmos00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     111453335  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:cmos03019]     111453335    03041 Spliceosome [BR:cmos03041]     111453335 Messenger RNA biogenesis [BR:cmos03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Other transport factors      111453335 Spliceosome [BR:cmos03041]  Complex B   Other components    Prp19-related factors     111453335  Complex C     111453335 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_N HAT_PRP39_C TPR_14 Suf Mad3_BUB1_I TPR_15 TPR_19 ARM_TT21_C ARM_TT21 Motif Other DBs NCBI-GeneID:  111453335 NCBI-ProteinID:  XP_022950160 UniProt:  A0A6J1GEX2 LinkDB All DBs Position Unknown AA seq 912 aa AA seqDB search MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARAESPFKKRFIIYERALKALPGSY KLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHKMPRIWIMYLQTLTNQKLVTR TRRTFDRALCALPVTQHDRIWEPYLVFVSQKGIPIETSLRVYRRYLKYDPTHIEDLIEFL VNSNLWQEAAENLASVLNDDQFYSIKGKTKHRLWLELCDLLTRHATEVSGLNVDAIIRGG IRKFTDEVGRLWTSLAEYYIRRNLHEKARDIFEEGMTTVVTVRDFSVIFDSYSQFEESML AHKMENMDLSDEEDEAQENGLEEEAEEDIRLDLDLSVSKFEKKILLGFWMYDDNDIDLRL ARLDHLMDRRPELANSVLLRQNPHNVEQWHRRIKLFEGNPTRQILTYTEAVRTVDPMKAV GKPHTLWVAFAKLYETHKDLPNARVIFDKAVQVNYKTVDNLASIWCEWAEMELRHKNFKG ALELMRRATAEPSVEVKRKVAADGNEPVQMKVHKSLRLWTFYVDLEESLGTLESTRAVYE RILDLRIATPQIIINYALLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRY GKTKLERARELFEHAVETAPADSVRPLYLQYAKLEEDHGLAKRAMKVYDQATKAVPNNEK LSMYEIYIARAAEIFGVPKTREIYEQAIESGLPDQDVKTMCLKYAELEKSLGEIDRARGI YVFASQFADPRSDLNFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQ KDQTLNLDEAKDKLKQAGVTEDEMAALERQLAPAIEDSAKDNSRKVGFVSAGVEESQADG VPKVTAHQEDIELPDESDSEEDEKVEIAQKEVPSAVFGGLARKKEDSDETDREKDDDSHL GALERIKRQKKA NT seq 2739 nt NT seq  +upstreamnt  +downstreamnt atgtcgatttcccaagatttatatccgtcgcaagatgaccttctctacgaggaagagctt cttcggaatccttttagtttgaagttgtggtggcgctacctcatagcacgagcagaatca ccattcaagaagcggttcattatctacgagcgagctctgaaagccctcccgggtagctat aagttatggtatgcatatctgcgcgaacgcctcgatctggtacgaaatcttcctattact cattctcagtacgaaactcttaataacacgtttgaacgagctcttgtgaccatgcataaa atgcctagaatatggataatgtacctacaaactttgacgaaccagaaattagtgacccga acgcgtcggacgtttgaccgagccctttgtgcccttccagtgacacaacatgatcgcatt tgggagccatacctcgtttttgttagccaaaagggtattccaattgagacctcgcttaga gtttatcgaaggtatttaaaatatgatccaacacatattgaagacttgattgaatttttg gttaattcaaatctgtggcaagaagctgctgagaatttggcttccgtgttgaatgacgat caattttattctattaaggggaagaccaagcatcggctgtggttagagttgtgtgatttg ctcactagacatgccactgaggtttcagggttgaatgttgatgctataatacggggcggc attaggaagttcactgatgaagtagggcgcttatggacatcacttgcagaatattacatc agaaggaatttgcacgagaaggcaagagatatatttgaagaggggatgactactgttgtt acggtaagagattttagtgtgatatttgattcatactctcaattcgaggagagtatgcta gctcataaaatggaaaatatggatttgagtgatgaggaagatgaagcacaggaaaatggt ctcgaggaggaggcggaagaggacatccgattagatcttgatttatcagtttctaagttt gagaagaagatacttctagggttttggatgtacgatgataatgacattgatttaaggcta gctaggttagaccatctaatggacagaagaccagaattagctaatagtgttcttctacga caaaatcctcataatgtcgaacaatggcatcggaggattaaattatttgagggcaatccc acaagacagatattgacgtatactgaggctgtgagaacagtggaccccatgaaagcagta ggtaagcctcataccttgtgggttgcttttgctaagctgtatgaaacccacaaagatctt ccaaatgcaagagttatttttgacaaagctgtacaagttaactacaagactgtggataac ttggctagcatttggtgtgaatgggcggaaatggaattgaggcataaaaattttaaagga gctctcgagctcatgcgtcgagctacagccgagccatctgttgaagtcaaacgaaaagtg gctgctgatggtaatgaaccggtccagatgaaggtgcacaagtccctaagactttggacc ttttatgtggatctggaagaaagtcttggaaccttggagtctacccgtgcagtttatgag cgaatactagacttaagaattgctaccccacaaattataatcaactatgctttgcttctt gaggaacacaagtacttcgaagatgcattcaaggtttatgaaaggggagtcaagattttc aaatatcctcatgttaaagatatatgggttacatatctatccaagtttgtaaaaagatat gggaagacaaaattggagcgagcaagagaactatttgagcatgcggttgaaacggcaccc gctgattcagttaggcctttgtatcttcaatatgcaaagcttgaggaagaccatggtttg gcaaagcgggctatgaaggtctatgatcaggcaactaaagctgttccaaataatgagaaa ctgagcatgtatgaaatatacattgcccgtgcagccgagatatttggtgttcctaaaact agagaaatctatgaacaagcaatagaatctggtcttccggatcaagatgtgaagaccatg tgcttgaagtatgctgagctggagaagagtttgggtgaaattgatcgtgctcgtggaata tatgtatttgcttcacagtttgcagacccgagatcagatttgaacttttggaacaagtgg cacgagttcgaggtccaacatggaaatgaagatacttttagagagatgcttcgtatcaaa aggagtgtttctgctagctatagccagacacattttatactgccggagtatctaatgcaa aaggatcagacactgaaccttgacgaggcaaaagacaaattgaagcaggctggggttaca gaagacgaaatggctgctcttgagaggcagttggccccggcaatcgaagactcggccaaa gataacagccgtaaagttggtttcgtgagtgctggagtggaggaatcacaagcagatgga gtaccaaaggtcactgctcatcaagaagacattgaattaccagatgaaagtgactcggaa gaagacgagaaggttgaaattgctcagaaagaagtcccatctgcagttttcggaggcctt gctcgaaagaaggaagactccgatgagaccgacagagagaaggacgatgacagccatctt ggtgcgcttgagagaataaaaaggcaaaaaaaagcttag

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