Cucurbita moschata (crookneck pumpkin): 111454236
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Entry
111454236 CDS
T05248
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03013
Nucleocytoplasmic transport
cmos03015
mRNA surveillance pathway
cmos03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111454236
09122 Translation
03013 Nucleocytoplasmic transport
111454236
03015 mRNA surveillance pathway
111454236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111454236
03041 Spliceosome [BR:
cmos03041
]
111454236
Enzymes [BR:
cmos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111454236
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111454236
Spliceosome [BR:
cmos03041
]
Complex C
Other components
EJC/TREX
111454236
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111454236
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
111454236
NCBI-ProteinID:
XP_022951402
UniProt:
A0A6J1GHI6
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVL
CHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILAL
TRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacaagagacaacgaatatgaggaagagctcctcgactatgaggaagaggaa
gagaaggcacccgattccgttggagctaaagtcaacggtgaagctggaaagaagggttat
gttggaattcacagttcgggattcagagacttcctattgaagccggagcttctccgtgct
attgtggactcgggatttgagcatccatctgaagtgcaacacgaatgtattccccaagct
atcctcggcatggatgttatttgtcaagctaaatctggtatgggtaaaactgctgttttt
gttctgtcaacattgcagcagattgaccctgttgctggtcaagtttctgccctagttctg
tgccatactagggagcttgcataccagatctgtcatgagttcgaaaggttcagcacttat
cttcccgatctgaaagttgcagtcttctatggtggggtgaatattaaaattcacaaagat
cttctgaagaacgaatgccctcatattgttgttggaacacccggaaggatattggcattg
acaagagacaaggacctttccctgaagaatgtgcggcattttatcttggatgaatgtgac
aagatgcttgagtcacttgatatgcggagggatgtacaggaaatcttcaagatgactcct
catgacaaacaagttatgatgttttcggcgacactcagcaaagaaatccgcccagtttgc
aagaagtttatgcaagatccaatggaaatatatgtcgatgacgaggcaaagttgacattg
catggtcttgtccagcactacatcaaactgagcgagatggagaaaaatcggaagttgaac
gacctccttgatgcattggacttcaatcaagtggttatttttgttaaaagtgttagtagg
gcagctgagctggataagttattggtggagtgtaattttccatctatatgtatccattct
ggcatgtctcaggaagagaggttgactcgatacaagggtttcaaggaaggacataagcgg
attcttgtggcaacagatttggttggtcgaggaattgacattgaacgcgtaaacattgtc
atcaactatgacatgccagattctgctgatacttacctgcacagggttggcagagctggt
agatttggcaccaaagggcttgcaattacttttgtatcatctgcagctgattctgatgtt
ctcaacaatgttcaagaaaggttcgaagtagatattaaggagcttccagagcagattgat
acatccacatacatgccatcatag
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