Cucurbita moschata (crookneck pumpkin): 111456191
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Entry
111456191 CDS
T05248
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111456191
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111456191
Enzymes [BR:
cmos01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
111456191
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111456191
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
111456191
NCBI-ProteinID:
XP_022953758
UniProt:
A0A6J1GP80
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All DBs
Position
Unknown
AA seq
618 aa
AA seq
DB search
MASRFSSLRLQRRRLHTATNQLSVRQIRNTDFYGCLGDLKNHISDSDFIALSLQNTGSSS
FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI
GMPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRIGRSFLTPSTYAVK
SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTID
VCSERQVLLVLELLSEFSDDLVPVVNPAKGGGTQAIRAILTSSKEDKILLEKELQNLEEE
ENKKFRGFREVVDIISASQKPILSYNSLNDFAFIHSKFLAPLPTGMDEFASSLHLVFPRV
LDVKHLISKIGGLSKPISIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILLCHL
FAKACSVLKIDLGGVQSNNNCLASKLDGCANVFGSFSPDHHESEDEDIKISTKNVRKVSC
RHLVFLWGFRDGMTAQSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLDAI
NSDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERASSEQHHSSFEADPET
ERLDIYYSNDSIINLADL
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctcggttctcatccctccggttgcagaggcgccgcctgcatactgccaccaat
caactaagcgttaggcaaattcgcaacaccgacttctatggctgcttgggggacctgaag
aaccacatctccgactccgacttcatcgccctctctttgcagaacaccggttcttcttcc
tttccttggcaccgccttcagtccttcgacacctacgataccgcctattgcaaggccaag
tacgccgccgagaagtttcagatccttcaattcgctctatgccccttctctgttagggaa
tccaagctaatcgctcatccgtacaactttcatttgttccccagagatgatctgaacatt
gggatgccttcttacagtttttcatgtcaagtttcacatctaacatccatggctcgtgaa
ggttttgactttgatgcttgcatatatgatggcatatcatacttatctagagctcaagag
tctatagcaaaagttcgaataggccgttcatttctaacacctagtacttatgctgtgaaa
tcttcttctagacagacaattgctgattcagtttttgttcaacgggttaaatcacgggta
aagaactggaaagatgcatgtaattcaagcacaaaaacaaatgacgctctgctaagttcg
ttgaaaaagctcatcattggcagcgagcagtatggatcaaggccatccatgactatagat
gtttgtagtgaacgtcaagttctacttgttttagagctgttgagtgagttttctgatgac
ctggttcctgtagtaaatccagctaagggtggaggaactcaagcaattcgtgccattttg
acgagctcaaaagaagacaagattcttcttgagaaggagcttcaaaatcttgaagaggaa
gaaaacaagaaatttcgtggttttcgagaggtggtagatatcatttctgcttcacagaag
cctattctctcctacaattctcttaatgattttgcatttattcattctaaattccttgct
cccctacctactggtatggatgagtttgcgtcctctttgcatttggttttcccaagagtg
cttgatgtaaagcatttgatcagcaagatcggtggcctcagcaagccaatcagtatagct
tcagctctttcttacttgaagaatcattattttgcacctattgatttggacattccagtt
gaagctacaggaaatgatcgcaagtttcatgggcacaacgctatactgttatgccatttg
tttgcaaaagcctgctctgtacttaaaattgatcttggtggcgtccaatccaacaacaat
tgtttggcctcaaagcttgatgggtgtgcaaatgtttttggttcattctcccccgaccac
cacgaatctgaggatgaggacatcaagatctcgacgaagaacgttagaaaggttagctgt
aggcatttggttttcttgtggggatttagagacgggatgactgctcagtcgatgaaaact
gcacttgaaggatcccatgaagttttctgtgaagagtttgatgtccggttcgtggacaag
aaatgcgccatcgtcgtattctggcaacctggcttatctgaggcgttccttgatgcaata
aacagcgatggcattgtgggatgtttaaaagatatggtatctgaaggcctaaaagcaaca
ggttatgaaacttacaagagggtgtgtaggttgggtttatgggaagcagatttagcggag
tccctggagagagccagttcagaacaacatcattccagtttcgaagctgatcccgaaacc
gagcggttagatatctattactctaatgattctataattaatttggctgatctttga
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