KEGG   Cucurbita moschata (crookneck pumpkin): 111457062
Entry
111457062         CDS       T05248                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
cmos  Cucurbita moschata (crookneck pumpkin)
Brite
KEGG Orthology (KO) [BR:cmos00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:cmos03009]
    111457062
Ribosome biogenesis [BR:cmos03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    111457062
SSDB
Motif
Pfam: Beta-prop_WDR3_1st WD40 Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_EML_2 EIF3I WD40_Gbeta Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_CAF1B_HIR1 Beta-prop_SCAP Beta-prop_IFT140_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR41 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_IP5PC_F Beta-prop_HPS5 Beta-prop_DCAF4 NBCH_WD40 Beta-prop_VPS8 Beta-prop_LRRK2 Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_SPT8 Beta-prop_DCAF12 Beta-prop_WDR11_2nd Beta-prop_Aladin
Other DBs
NCBI-GeneID: 111457062
NCBI-ProteinID: XP_022954958
UniProt: A0A6J1GSK9
LinkDB
Position
Unknown
AA seq 461 aa
MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR
KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGAYLAGGAHSGNIHLWEVGSGK
LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEH
KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLF
SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW
DIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF
PSSRPLGENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME
MNNHLQSKLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH
NT seq 1386 nt   +upstreamnt  +downstreamnt
atgagcaatgttggcgaaacaatggcgttggctgtgtgcagcgacaagaacatgggatcg
gggattacgatttgggatccaaaaacaggcgaaactctccttcacattccgacttgcgct
tcgccttcttatggtttaatttccttgagaaacgagttccttgttgcttctcagactcgt
aaggaagggtccgttggtggtggatccatgttcgtttggtccctgagcaagcctcagtcc
cctcttaggagctatccattggagcctattggaccacttgcttcaacaaaggacggtgca
tatcttgcaggcggagctcattccggtaatattcatctctgggaggttggtagtggtaaa
ttgcttaagctttggagtgggcatcataagcccataaaattcatcctgttttcttgggat
gattcgtttctcattactggttcggccgatggaatgatttgtgtctggtccatgattagt
ttgctggatgtggaacttgtgggaagcgcacagccaatattatactgtctcatggaacat
aagtcgtctttaactggtctaattactatgtctggctactcgatgtcgatgatcatttcg
agctccctcgatggcagtttaaagttttgggatttaatgtcgggaatgattcggggaact
caaggtcatgtagagggaatcactgagattgttcttcatccaactgagcaatttctgttc
tctgggactgttgatggaaaaatttttgctagcaggcttgaatttggattggataactgc
attaccattaaagaaagccaattatttgcatcaacaggacacaagggagctattactgct
ctggccttcagtcaaatggatctagtttctgcatccgaggattgcacagtctgcatatgg
gacatcgatagtcagaggatcattcaaaagcttgaccacaagaaagggagaataaccaac
ttggtagcagttccacggtcgtcgctgctgatctctacgtcaaaccgtaagagagtcttg
aaacagttcgacaagtatccccagccagccaacttgtcgacgagcacaatacctctcttt
ccctcttcccgacccctcggggagaatccaaatctcgtcggattcacaagtgccggttca
ctgaatcagcaaatatttgatatgaagacagaagggacatcagcagcaatacagatgaaa
gtcgatacacgtttacaaagccgaatgtgggcgtctagaatgacgaagcaagttatggag
atgaacaaccatcttcaatcaaagttgcttgacatgatgcagactcgtttgttcccgaag
aaacgaaaagatcaaagagatcgagtcgctcggactagggagaagcatccattgtcattc
cattga

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