Cucurbita moschata (crookneck pumpkin): 111457116
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Entry
111457116 CDS
T05248
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111457116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmos03021
]
111457116
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111457116
Transcription machinery [BR:
cmos03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111457116
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111457116
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
111457116
NCBI-ProteinID:
XP_022955036
UniProt:
A0A6J1GSL5
LinkDB
All DBs
Position
Unknown
AA seq
706 aa
AA seq
DB search
MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSSVPPAASAVSNTGAGAGGPPVTADA
SGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD
CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSN
KFFSQRGVGLSQQNEKSQFPPGPATVTQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQ
TASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS
ADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF
QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEK
AKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGMMWPPHM
PMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEFM
NPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVGPPLYPP
PAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYPD
EQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggaggattcggagggtggtctcagcttcgatttcgagggaggtcttgatgccggtccc
accaaccccgccgccgcctccttgcccctcatccactctgactcttctgttcctcctgcc
gcctccgccgtctccaacactggcgccggtgccggtggtcctcctgttactgctgacgct
tctggcgccgcaactggcaacgttggcagccggaggagcttccggcagacggtttgccgg
cattggctccgcagcctgtgtatgaagggcgacgcttgtggcttccttcaccagtatgat
aaatctcggatgcccatttgccgattcttccgtctctatggcgagtgccgtgaacaggat
tgcgtgtataaacataccaacgaagatatcaaggagtgtaatatgtacaagtttggtttc
tgtccaaatggtcctgattgtcggtataggcatgctaagttgccgggacctccacctccg
gtggaagaaatccttcagaaaattcagcatttgggtccatacaattatggcacctcgaac
aaattcttttcgcaacgtggagttggcttatctcaacagaacgaaaaatctcagtttcct
ccgggtccagccaccgttactcaaggagtgataggaaaaccttctgtagcagaatctgct
aatgtccaacaacagcaagcccaacagtctgcacaacaaaccagccaggctccaatacaa
actgcttctaatggtcaggtcaatcaattaaacagaaattcaacgtctttgcctcccgga
atatctaggtactttattgttaaaagttgcaaccgtgagaatttggaattatctgtacaa
caaggggtatgggcaactcaaagaagcaatgaagctaaacttaatgaagcttttgattct
gctgataatgttattttgattttctcagtcaatcggactcggcattttcagggttgtgca
aagatgatgactaggattggtggatctgtcagtggtggcaattggaagtatgcacatgga
actgcgcattatgggcaaaacttttcactcaaatggctgaagttatgtgaactatccttc
cagaaaactcgccatttgagaaatccttataatgaaaacttaccagtaaagattagtaga
gattgccaagagctagaaccttctattggtgagcagctggcttctttgctttatcttgag
cccgatggtgacctcatggctgtctcgatagcagcggaatcaaaacgagaagaggagaaa
gcaaagggagttaatcccgatatcagaaatgagaatccagatatcgtcccgtttgaggat
aacgaagaagaggaagaagaagaaagcgaagaggaggaggaggagagctttggccagtcc
gttggtccaccagctcagggcagaggaaggggccggggaatgatgtggcctccacacatg
ccgatggggcgtggtgcgaggcctttccatggaatgcaaggttttccacctgggatgatg
ggtccagatgggatgtcatatggacctgttacacctgatgggtttcccatgcctgacatt
ttcggtatggctcctcgtggtttcaatccgtacggtgctagattttccggtgagtttatg
aatccccaatctgctatgatgtttcgtggacgaccttctcaacctggtgccatgtttcct
cctggtgggtttgggatgatgatgggtcaaggacgtggtccctttatgggtgggatgggg
gttactggtactaacccagctcgagctggtcggcctgtaggacctccattgtatccacct
cctgcagtaccttcatctcagaacatgaaccgagctatgaagagggatcaaaggggacca
ggtagtgataggaatgatagatatattgcaggttcagaccaaaacagaggccaggagata
ccgggtagcggacacgacgacgaaatgcaatataaacaaggatcaaaagcttatcctgat
gagcaatatggtatgggaaccgccattaggaacgaagagagcgaaagtgaggacgaggct
cctcgacgatcgaggcacggagaagggaagaagaagcggagaggctcagaaggagatgcc
actgcaatctctgatcagtga
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integrated database retrieval system
