Cucurbita moschata (crookneck pumpkin): 111457194
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Entry
111457194 CDS
T05248
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018
RNA degradation
cmos03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111457194
09123 Folding, sorting and degradation
03018 RNA degradation
111457194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111457194
03041 Spliceosome [BR:
cmos03041
]
111457194
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111457194
mRNA degradation factors
5'-3' decay
Lsm complex
111457194
Spliceosome [BR:
cmos03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
111457194
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
111457194
NCBI-ProteinID:
XP_022955136
UniProt:
A0A6J1GT46
LinkDB
All DBs
Position
Unknown
AA seq
98 aa
AA seq
DB search
MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtggacctggacttgaatcactggttgatcaaacaatatcagttatcactaat
gatggccgcaatatagtgggagtgttgaaaggatttgaccaggctacaaatattatcctc
gatgaatctcatgaacgtgtttactcgaccaaggaaggagttcagcaacttgttttgggt
ctatatataatcagaggcgacaatataagcattgttggggagctagatgaagaacttgat
tcaaatttggacttgtcgaagttgagagcccatcctctaaagcctgtgattcattaa
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