Cucurbita moschata (crookneck pumpkin): 111458063
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Entry
111458063 CDS
T05248
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111458063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmos03041
]
111458063
03009 Ribosome biogenesis [BR:
cmos03009
]
111458063
Enzymes [BR:
cmos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111458063
Spliceosome [BR:
cmos03041
]
Complex A
U1 snRNP components
U1 related factors
111458063
Complex B
111458063
Ribosome biogenesis [BR:
cmos03009
]
Eukaryotic type
Pre-60S particles
Helicases
111458063
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
111458063
NCBI-ProteinID:
XP_022956332
UniProt:
A0A6J1GW12
LinkDB
All DBs
Position
Unknown
AA seq
502 aa
AA seq
DB search
MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSSSVQSSSSKSDHYASEAPRKVDLDGLPHFE
KNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFT
EPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILSPGDGPIVLVLAP
TRELAVQIQQEATKFGASSKIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESH
HTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLY
NPYKVIIGSPDLKANHAIRQHVDIVSENQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQI
TRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYD
FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIAILEEAGQKVSPELAAMGRG
APPPPSGHGGFRDRGRGYGGGR
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgctacgacagccgctcctccgatcccacttcttaccgcgaccgtagaagtgat
tcaggttttggtggctctacaggctatagcagttcagttcaatcctcctctagcaagagt
gaccattatgcttctgaggcccctagaaaggtggatttggatggattgcctcattttgag
aagaacttctacattgaggcaccatcagtggctgcaatgacagagagagaggttgacgag
tatcggcaaaggagggagattactgtagaaggtcgtgatgttcccaaaccagtcaagtct
ttccgtgatgttgggtttcctgattatgtcatgcaagaaatttccaaagctggcttcact
gaacctactcctattcaatcacaaggatggccaatggcactcaaaggtcgagacctcatt
ggtattgctgaaactgggtccgggaagacacttgcataccttttgcctgcaattgtacat
gtcaatgcacagccaatcctttctcctggagatggtcccattgtgttagttctagctcct
actcgtgaacttgccgttcaaatacaacaagaagctacaaaatttggtgcatcatcaaag
attaagaacacatgcatatatggtggcgttcccaaggggcctcaagtgcgtgatcttcag
aaaggagttgaaattgtaattgctacaccgggaaggttgattgatatgatggagtcacat
catacaaacttgcgaagggttacataccttgtactggatgaggctgatcggatgctggat
atgggatttgaccctcaaatacgaaaaattgtttcacagattcggcccgatagacaaact
ttgtactggagtgctacctggcctaaagaagttgaacaattggccaggaagtttctctac
aatccatacaaggtcatcatcggttctcctgatctaaaagctaatcatgccatacgccaa
catgttgatattgtctctgaaaatcagaaatataacaaattggtgaaattgctagaggat
atcatggatgggagtcgaatcctgatctttatggatacgaagaaaggatgtgatcaaatt
acccgacagcttcgcatggatggttggcctgcactttcaattcatggtgataagagtcaa
gcagaaagggattgggttctctcagaatttaggtctggcaagagtcctataatgacggct
acagatgttgctgctcgtggtttagacgtgaaggacgtgaaatatgttataaattatgat
tttcctggatctctcgaggattatgttcaccgaattggtagaacaggaagagctggagcc
aaaggaactgcatacactttcttcaccgctgctaatgccagatttgcaaaagaacttata
gcgattcttgaagaagctggacagaaggtaagtcctgaactggcagcaatggggcgtggt
gcacctcctcctccctcaggtcatgggggattccgagatcgtggaaggggctatggtgga
ggacgatga
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