Cucurbita moschata (crookneck pumpkin): 111458343
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Entry
111458343 CDS
T05248
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111458343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmos03021
]
111458343
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111458343
Transcription machinery [BR:
cmos03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111458343
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111458343
U7-dependent histone pre-mRNA processing factors
111458343
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
111458343
NCBI-ProteinID:
XP_022956704
UniProt:
A0A6J1GZU7
LinkDB
All DBs
Position
Unknown
AA seq
691 aa
AA seq
DB search
MASVGQPPSFKKRELSATREEDKLIVTPLGAGNEVGRSCVYMSYKGKVVLFDCGIHPAYS
GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLS
DFVKVSKVSIEDMLFDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVD
IAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYGVQLHQPRHIREKRFTDVVHS
TISQGGRVLIPAFALGRAQELLLILDEYWANHPDLHNVPIYYASPLAKRCLTVYETYTLS
MNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPGGLQSGLSRQLFDLWCSDKKN
SCVLPGYVVEGTLAKTIINEPKEVTLMSGLTAPLNMQVHYISFSAHADFAQTSAFLEELM
PPNIILVHGEANEMGRLKQKLISQFSDRNTKILTPKNCQSVEMYFNSQKMAKTIGKLAEK
TPEVGETVSGLLVKKGFAHQIMAPDDLHIFSQLSTANINQRITIPYSNAFNVIVRRLKQV
YESVESSTDEESGVPTIRVHDRVTVKHESERHISLHWTSDPLSDMVSDSVVALILNINRE
VPKVIVESEAVKTEEENEKKAEKVIHALLVSLFGNVKLGGNGKLVINVDGSIAELDKQSG
EVESENEVLKERVKTAFRRIQCAVKPIPPSA
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggttggacagccgccgtcctttaagaaacgggagttatccgcgacgagagag
gaggataagcttattgtaactcctcttggggctggcaatgaagtgggtcgatcctgcgtt
tatatgtcttacaaaggcaaagttgtgttgttcgattgtggaattcaccctgcttactct
ggcatggctgctttgccgtactttgatgagattgacccctcaacaattgatgttctgctc
attactcactttcatttggatcatgccgcatcactcccttatttcttggagaagactaca
ttcaaaggacgagtctttatgacttatgctactaaagcgatctacaagttgttgctgtcg
gactttgtgaaagtgagcaaagtttcgattgaagatatgttgttcgacgagcaggacata
aatcgttccatggacaaaattgaggtcattgatttccatcaaacagtagaagtaaatggt
attcggttttggtgttacactgctggtcatgtgcttggtgctgccatgtttatggtggat
attgctggtgtccgagtcctctacactggagactattcgcgtgaagaagatcgacatctt
cgagctgctgagatgcctcaattttctcctgatgtttgcataatcgaatctacatacggt
gtccagctccatcaacctcgacatattcgagagaagcgcttcactgatgttgtacattca
accatttctcaaggtggtcgtgtgctgattccagcttttgcccttggacgtgcccaggaa
ctcctccttattcttgatgagtactgggcgaaccatcccgacctccataatgttcccata
tattatgcttctcctctggcaaaaagatgtttgactgtatacgagacgtacacgctctcc
atgaatgataggatccaaaatgccaaatcaaacccctttagattcaagtacatatcccca
ctaaagagcattgaagttttcaaagatgttggcccatcagtggtgatggccagccctggt
ggacttcagagcggtttatcacgacagctttttgacttgtggtgttctgataagaaaaat
tcatgtgtgcttcctggttatgttgttgaagggacactggctaagactatcatcaatgaa
ccaaaggaagtcaccctcatgagtggactcacagctcctcttaacatgcaggttcattac
atttcgttctctgctcatgctgactttgcgcagaccagcgcgttcttggaagagctcatg
ccgcccaacataattctcgtgcacggagaagctaatgagatggggaggctcaaacagaag
cttatttcccagttttctgatcggaatacaaagattcttactccaaagaattgtcagtct
gttgaaatgtacttcaactctcagaagatggcaaaaactattggaaaattggctgagaaa
accccagaagtcggcgaaactgtcagcggtttactggtgaagaaaggatttgcacatcaa
ataatggcaccagatgatctacacatcttctctcagctatcaactgccaacatcaaccag
cgtattacaattccatactcgaacgcctttaatgtgattgtacgcaggctcaaacaggta
tatgagagtgtagaatcttcaacagacgaggagtccggcgttccaacgattcgtgtgcac
gatcgtgtgacagtaaagcacgaatcagagaggcacatctcacttcactggacatcagac
ccgttaagcgacatggtctcggattctgttgtagctctcatcctgaacatcaaccgcgag
gtaccgaaagtcatcgtcgagtcagaggctgtaaaaacggaagaagagaacgagaagaaa
gccgagaaggtaattcatgcactccttgtttcactctttggcaatgtgaagttaggagga
aatgggaagctggtgatcaacgttgatgggagtatagcagagcttgataaacagagtggg
gaggtagaaagtgaaaatgaagttctcaaggaaagagtaaagacagccttccggcgaatc
caatgcgctgtgaagccaattcctccctctgcatga
DBGET
integrated database retrieval system
