Cucurbita moschata (crookneck pumpkin): 111458384
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Entry
111458384 CDS
T05248
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111458384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111458384
03012 Translation factors [BR:
cmos03012
]
111458384
Enzymes [BR:
cmos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111458384
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111458384
Translation factors [BR:
cmos03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111458384
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
dsrm
HA2_N
Helicase_C
AAA_22
nSTAND3
ATPase
AAA_19
NACHT
Dicer_dimer
T2SSE
ABC_tran
NPHP3_N
Myosin_head
Motif
Other DBs
NCBI-GeneID:
111458384
NCBI-ProteinID:
XP_022956782
UniProt:
A0A6J1GXB4
LinkDB
All DBs
Position
Unknown
AA seq
1071 aa
AA seq
DB search
MKDRTPSSNGAVYVPPHLRLRSVVTRSDRSSAVSAVDCKLREAPASLLDSGTIPPPCLDS
RSQELLSMGKSRFNSVHYDFACDDGAPVDSWGFSPPANIDLWKRKLALLLRDKEKQELVS
REKKDRHDFEQIAALASRMGLFSHLYAKVAVFSKVPLPNYRFDLDDRRPQREVSLPPGLL
RRVDEHLGEFLSQKSRFKCFQDNSVSRSSSSGSIATDEGLFEQPELQASSKAVMEKVLWR
RSLHLRDQQHAWQSSLDGSEMLEFRKNLPAYKEKDALLTTISQNQVIIISGETGCGKTTQ
VPQFILESEIESLRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKG
RDTHLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRL
ILMSATLDAELFSSYFGGAQIIYIPGFTHPVKTHFLEDILEMTGYRLTPYNQIDDYGPEK
TWKMSKQAPRKRKTQIASTVQRLIFTEPDKGVRKVVLATNIAETSITINDVVFVLDCGKA
KETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECYHLYPRSVFDSFFEYQLPEIL
RTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVQNAIEYLKIIGAFDESENLTVLGRY
LTMLPMEPKLGKMLIIGSIFNCLDPILSIVAGFSVRDPFLTPLEKKDAAEAAKSQFSRDH
SDHLAIIRAYEGWKEAERNFGGYDFCWKNFLSVQSMKAIDSLRKEFFSLLRDTGLVDEHS
NTYNAWSLDERLIRAVICCGLYPGVCSIVHNEKSFSLKTMEDGQVLLYSNSVNARESRIP
YPWIVFNEKIKVNSIFLRDSTAISDSMLLLFGGSISKGDQEGHLKMLGGFLEFFMKPDVA
ETYQKLRMELEELIQMKLLNPTMDLHSHHELLSAIRLLISEDQCEGRFTFGRQILQQPSK
KSTLAAAPNSVSRIESGPGGDNSKSQLQTLLTRAGYAAPIYKTKQLKNNHFQATVEFNGL
QIMGQPCTNKKNAEKDAAAKALEWLMGGNQIGHDYINQMSMMLKRSKKDHN
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaccgtactccttcctccaatggcgccgtttacgtccctcctcacctccgtctc
cgttccgtcgttactcgttctgatcgttcctctgctgtttctgctgttgactgcaagctt
agggaggctccagcctcgctgctcgattccggaaccattcctccgccttgccttgattct
cgatctcaagaactcctctcgatggggaaatcgcgttttaattccgtgcactatgatttt
gcctgcgacgatggggctcccgtggatagctggggtttttcacctcctgctaacattgat
ttgtggaaaaggaagttagcactacttttacgtgacaaggagaagcaagagttagtttca
agggagaaaaaagatagacatgattttgagcaaatagctgctttggcaagtagaatggga
ctttttagccatctatatgccaaagttgctgtttttagtaaggtcccgttgccgaactac
agatttgatttggatgatcggcgtccacagagggaggtttctttgcctcctgggttgctt
agaagagttgatgaacatctgggagaatttctctctcaaaagtctcggtttaaatgtttt
caagataactctgtctctagatcaagcagcagtggtagcattgctacagatgaagggctt
tttgagcaacctgagctacaagcatctagtaaggctgtgatggaaaaagttctttggcgg
agaagtttgcatctgcgtgatcaacagcatgcttggcagtcatctctagacggaagcgaa
atgctggaattccggaaaaatctccctgcttacaaggagaaggatgcattattgaccaca
atatcacagaatcaggttattattatttcaggtgaaactggttgtggcaagactacgcaa
gttccccaattcattttggaatcagaaatagaatcactccgtggtgctgtttgcagcatc
atatgtacacagccaagacgaatatctgctatgtctgtctctgagagagttgcttctgaa
agaggcgagaagttgggtgaatctgttggttataaagtgcggctggagggtatgaaaggg
agggatactcatcttctcttttgcaccaccggcatcttgttgagaagactgctggttgat
agaaatttgaaaggcgtaactcatgttattgttgatgaaattcatgagcgtggaatgaat
gaagattttctgcttattgtcctgaaagatctccttcctcgtcgaccagaattgaggttg
attctaatgagcgcaactttagatgcagaacttttctcatcctactttggtggggctcaa
ataatttacattccgggattcacacaccctgtcaaaactcattttctggaggatattcta
gaaatgacgggttacagattaactccatacaatcaaatagatgattatggtccagagaag
acttggaaaatgagcaaacaagcaccaagaaagaggaaaacccagattgcctctactgtt
cagaggttaatatttactgaacctgacaaaggagtgaggaaggtagtgcttgcaacaaat
attgctgagacaagtatcacgataaatgatgttgtgtttgttctggattgtggaaaggca
aaagaaacatcgtatgatgctttaaacaacactccttgtttgcttccctcttggatatcc
aaggtttctgctcaacaaagaagaggaagggctggtcgtgttcaacctggagaatgttat
catctataccctaggtctgtgtttgattcttttttcgagtatcagctacccgaaattttg
agaacacctttacagtccctctgcttgcaaataaaaagcctaaagcttggaagtatatca
gagtttctatctagggctttgcagtcgccagagctactagcggttcagaatgctattgaa
tatttaaagatcattggagcatttgatgagagtgaaaatcttactgtcttaggtcgttat
ttgactatgctcccaatggaaccaaaattgggaaagatgttgataataggttctatcttc
aattgtttggatccaattttgtccattgttgctggcttcagtgtgagagacccttttcta
acaccacttgagaagaaggacgctgcagaggctgcgaagtcccaattttcacgagatcat
agtgatcaccttgccattatccgggcttatgagggatggaaagaagctgagaggaacttt
ggtggttacgacttctgttggaagaacttcctttctgtacaatcgatgaaggctattgat
tcattaaggaaggagtttttctctttgcttagagatactggtttagttgatgagcactcg
aacacgtacaatgcttggagtctagatgaacgactcatacgtgcagttatttgctgtggc
ctctatcctggagtttgctccattgtgcataatgagaagtcattttctctcaaaactatg
gaggatggccaggtacttctctattcgaactcagtcaatgctcgagagtcgaggattcca
tatccatggatagttttcaatgagaagataaaagtgaactccattttccttcgagattca
acagctatctctgactcaatgctgcttctctttggtggaagcatctcaaaaggtgatcaa
gagggacacttgaaaatgttgggcggttttttggaattttttatgaaacctgatgtagca
gagacatatcagaaattaagaatggaacttgaagagcttatacagatgaagctactaaat
cctacgatggacttgcactcccaccatgagctcctatctgctatacgcttgcttatttca
gaagaccagtgtgaaggtcgatttacttttggccggcagatccttcagcaaccctccaag
aaatcaactctggccgcggcaccaaattctgtttcaagaattgaaagtggacctggtggt
gacaattctaagagtcagctgcagactttactcacgagggctggatatgctgcacccatc
tataagacaaagcaattgaagaataatcatttccaagcaaccgttgaatttaatggactg
caaattatgggacaaccttgtaccaacaaaaagaatgcagaaaaggatgcagcagctaag
gctctcgagtggttaatgggtggaaatcagattgggcacgactatatcaaccaaatgtct
atgatgctaaaaagaagcaagaaggatcataactaa
DBGET
integrated database retrieval system
