Cucurbita moschata (crookneck pumpkin): 111458564
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Entry
111458564 CDS
T05248
Name
(RefSeq) spliceosome-associated protein 130 A-like
KO
K12830
splicing factor 3B subunit 3
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111458564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmos03021
]
111458564
03041 Spliceosome [BR:
cmos03041
]
111458564
03036 Chromosome and associated proteins [BR:
cmos03036
]
111458564
Transcription machinery [BR:
cmos03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
111458564
Spliceosome [BR:
cmos03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
111458564
Complex B
111458564
Complex C
U2 SnRNP specific factors
111458564
Chromosome and associated proteins [BR:
cmos03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
111458564
TFTC complex
111458564
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
111458564
NCBI-ProteinID:
XP_022957076
UniProt:
A0A6J1GY83
LinkDB
All DBs
Position
Unknown
AA seq
1214 aa
AA seq
DB search
MYLYNLTLQRATGIVFAINGNFSGGKTQEIVVARGKVLDLIRPDDSGKIQTLLSVEIFGA
IRSLAQFRLTGALKDYIVVGSDSGRIVILEYNKDKNVFDKIHQETFGKSGCRRIVPGQFL
AVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGVDCGFDNPI
FAAIELDYSEADQDATGVAASEAQKHLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAAMHKQKTMFFFLLQ
TEYGDIFKVTLEHNNDSVKELKIKYFDTIAVTASMCVLKSGFLFAASEFGNHSLYQFQSI
GDDADVESSSATLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPIMDMKIVNLFEEETPQ
IFTLCGRGPRSSLRILRPGLAISEMAVSELPGVPSAVWTVKKNINDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTSGKR
TIVKVGSNRLQVVIALSGGELIYFEMDMTGQLIEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQILSVQSVSAAPESLLFLEVLASVGGEDGADHPASLFL
NAALHSGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFSVVLRGRRAILCLSSRPWLGYIH
QGHFLLTPLSYETLEYASSFSSDQCAEGVVAVAGSFLRVFTIERLGETFNETVIPLRYTP
RKFVLHPRRKLLVVIESDQGAFTAEEREAARKECFEAAGAGENGHGSMEQMENGGDDDDK
DDPLSDEHYGYPKAESEKWVSCIRVLDPRSATTTCLLELQDSEAAFSVCTVNFHDKEYGT
LLAVGTAKGLQFFPKRSLVAGYIHIYRFLEDGKSLELLHKTQVEGVPLALAQFQGRLLAG
IGSVLRLYDLGKRRLLRKCENKLFPNTIVSIQTYRDRIYVGDIQESFHYCKYRRDENQLY
IFADDSVPRWITASYHVDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKL
NGAPNKVEEIIQFHIGDMVTSLQKASLIPGGGECILYGTVMGSLGALHAFTSRDDVDFFS
HLEMHMRQEHPPLCGRDHMGYRSAYFPVKDVIDGDLCEQFPTLPLDMQRKIADELDRTPG
EILKKLEEVRNKII
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgtacctatataacctcactttgcaacgagctaccgggattgtttttgctataaatggg
aatttctccggtgggaagacgcaggagatagttgtggccagagggaaggtcctggatctc
attcgtccagatgatagtggtaagatccaaactcttctttctgttgaaatctttggtgct
attcggtctttagctcaatttaggcttactggggctctcaaagattatattgttgttggg
tctgattcgggtcgaattgtcattctggagtacaataaggataaaaatgtgtttgacaag
atacatcaggagacttttgggaagtctggttgtcgccggattgttccggggcagtttttg
gctgttgatcccaaaggaagggctgttatgattggggcatgtgagaagcagaagcttgtt
tacgttttgaacagagatacagcagcgaggcttactatttcttcgccattggaggctcac
aagtcgcatacgatagtctattcaatttgtggagttgattgtggatttgacaatccaata
tttgctgctattgagttggattactcggaggcagatcaggatgctacgggggtggcagca
agcgaggcccagaagcatttgacattttatgaacttgatctcggtctcaatcacgtctct
aggaagtggtcagaacctgttgataatggtgctaatatgcttgttactgtccctggaggt
ggggatggtcctagtggagtgttagtctgtgctgaaaattttgtgatttataagaatcag
ggacatcctgatgtgagagcggtcattcctagacgtgcagacttacctgctgaacgtggt
gtgcttatagtttcagcagcaatgcataagcaaaaaacaatgtttttctttcttttacag
acagagtatggagatatatttaaggttaccttggaacacaacaatgacagtgtcaaagaa
ctgaagatcaagtattttgatacaattgcagttacagcttcaatgtgtgtactgaaatca
ggatttctatttgctgcctcagaatttggaaatcactcactataccagtttcaatccata
ggagatgatgctgatgttgagtcttcatcggctactctgatggaaacagaagaaggtttt
cagcctgtcttttttcagcctaggagacttaaaaatcttgttaggattgatcaagttgag
agcttaatgcctataatggacatgaaaattgttaatctttttgaggaggaaacaccccag
atatttactctctgtgggcgtggtcctcgatcatctttgcgaatattgagacctggtttg
gccatcagtgaaatggctgtgtcagagcttcctggtgttcctagtgctgtttggactgtg
aaaaagaacatcaatgatgagtttgatgcatacattgttgtgtcgtttgctaatgcaacg
cttgttctttctattggtgagacagttgaagaagttagtgatagtggatttcttgacacg
accccttcccttgctgtttctttgataggcgatgattctctcatgcaagtccatcctaac
ggtattaggcatattagggaagatgggcgtattaatgaatggagaacttcgggcaagagg
accattgttaaggttggttctaataggcttcaagtggtgattgccctgagtgggggtgag
cttatttattttgagatggacatgactggtcagttaatagaggtggagaagcatgaaatg
tctggagatgtggcttgcttggacattgcccctgtacctgaaggaagacagcgttcacgt
ttcctagcagttggttcttatgacaacacgatacgaattctatcattggatcctgatgac
tgtatgcaaattttaagtgtgcaaagtgtttctgcagctccagaatctctcctatttctt
gaagtgttggcatcagtaggtggggaggatggtgcagatcatcctgctagccttttccta
aatgctgcattgcattctggggttttattcagaacagtagtggatatggtgacaggccag
ctttctgattcccgatcccggttcttaggactaagagcaccaaaactattttctgttgtt
ttgagggggaggcgtgcaattctttgcctctcaagtagaccttggcttggatatattcat
caagggcattttctattgacgccactatcatatgaaactcttgaatatgcctcctcattt
tcatcggatcagtgtgcagaaggtgtagttgctgtggctggcagtttcttgagggttttt
accatcgagagattgggagaaacatttaacgaaacagtcattcctcttaggtacacacca
agaaaatttgtgcttcatcctaggagaaaactattggttgttattgagagtgatcaggga
gcattcactgcagaagagcgagaagctgctagaaaagaatgctttgaggctgcaggggct
ggggaaaatggacatggctcaatggagcaaatggagaatggtggagatgatgatgataag
gacgatcctttatctgatgagcattatggttacccaaaggcagagtctgaaaaatgggtt
tcttgcatccgagttctcgatcctaggtcagccacgacaacttgtctgctggagcttcag
gacagtgaagcggcattcagcgtttgtaccgtgaatttccacgacaaggaatatggaacc
cttttagccgttggcactgcaaaggggctgcagtttttcccaaaacggagtttagttgct
ggatatattcatatttatcgttttctggaggatggaaaatcccttgagcttttgcacaag
acacaagtggaaggtgttcctctcgctttagctcagttccaaggaagattacttgcagga
ataggatccgtgctcagattgtatgatttggggaaaagaagattgcttaggaaatgtgaa
aataagttgttcccgaatacaattgtgtctattcagacataccgtgatcgaatttatgtt
ggcgacattcaggagtccttccattattgcaagtataggcgggatgaaaaccaactatac
atatttgctgatgattctgttcctagatggattacggcatcatatcatgtggattttgac
accatggctggtgctgataagtttggaaatatctattttgtgcggttaccacaagatgtc
tcagatgagattgaagaagatccaaccggaggaaagataaaatgggagcagggaaagctt
aatggagctcctaacaaagttgaggagatcatacaatttcacatcggtgacatggtcacg
tcgttgcaaaaggcgtctttgattccagggggtggagaatgcattttgtacggtacagtg
atgggaagcttgggggcattgcatgctttcacctcccgtgatgatgttgatttcttttct
cacttggagatgcatatgaggcaggagcatccacctttatgtggaagagatcatatgggt
tatagatcagcttattttcctgttaaggatgtgattgatggggatctgtgcgagcagttc
ccaacccttcctctggatatgcagagaaagattgctgacgaactggaccgtactccagga
gagatactgaaaaaactcgaagaagtacgaaataagattatttga
DBGET
integrated database retrieval system
