Cucurbita moschata (crookneck pumpkin): 111458570
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Entry
111458570 CDS
T05248
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111458570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111458570
03012 Translation factors [BR:
cmos03012
]
111458570
Enzymes [BR:
cmos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111458570
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111458570
Translation factors [BR:
cmos03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111458570
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
nSTAND3
AAA_22
AAA_19
ATPase
AAA_16
T2SSE
PhoH
ABC_tran
Myosin_head
Motif
Other DBs
NCBI-GeneID:
111458570
NCBI-ProteinID:
XP_022957081
UniProt:
A0A6J1GY87
LinkDB
All DBs
Position
Unknown
AA seq
1144 aa
AA seq
DB search
MHNFKRLPNVFLVLSKNINCDLSNKYSLAVRPLKLLLQSHSFSVSRVWRGSYHYAAEQFS
DDEYECDVENNTASSSVANIDEWKWKLSLLSRNEKDQEIISRDNRDKRDFEQISNLAKKM
GLYCSMYGKVVVASKVPLPNYRPDLDDKRPQREVAIPLSLQRRVEGLLQEHCDRIRLSSA
KASEISNDAKSIDEVKDVNTDEYENSYLDESVMEKVLQRRSLRMRNMQRAWQESPEGRKI
LDFRRSLPAFKEKERLLQAIAQNQVVVISGETGCGKTTQLPQYLLESEIETGRGAFCSII
CTQPRRISAMAVSERVSIERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDR
NLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSSYFGGAPT
IHIPGFTFPVRAYFLEDVLEITGYKLTSFNQIDDYGQEKTWKTQKQLVPRKRKNQITTLV
EDALDKSTLGNYSSNTRDSLSSWMPDCIGFNLIEAVLCHICRKERPGAVLVFLTGWEDIS
SLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQRLIFEKPPQNVRKVVLATNMAEASITIN
DVVFVIDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGKCYHLYPKCVFA
AFSEYQLPELLRTPLNSLCLQIKSLQVPSVGEFLSSALQPPEPLAVQNAIGFLKMIGAFD
EKENLSNLGKFLSMLPVDPKLGKMLVMGAIFHCFDPILTIVSGLSVRDPFLLPQDKKDLA
GTAKARFSAKDYSDHMALVRAYEGWKDAEREGSSYEYCWRNFLSAQTLQAIDSLRRQFSF
ILKDAGIVDLDGSTSNKLSHNQSLVRAIICSGLFPGVASVVHRETSMSFKTMDDGQVLLY
ANSVNARYDTIPFPWLVFGEKVKVNTVFLRDSTGISDSMLILFGGAVKCGVQAGHLKMLN
GYIEFFMDSSLAECYLQLKEELDKLIENKLQNPGLDIFKEGKYLVLSVQELVSGDQCEGR
FVFGRESRKQVSTDDKFTRDGSNPKSLLQTLLMRAGHTPPKYKTKHLKTNEFRALVEFKG
MQFVGKPKKNKQLAERDAAIEALAWLTHTSDNNTNSDDDSPIDVTDNMLKLLGKRRRSKG
RPGY
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgcataatttcaagcgacttccaaatgttttcttagtattatcgaagaacatcaactgc
gacctgtctaacaagtacagcctcgctgtgaggccacttaaactgcttctacagtctcat
tcgttttctgtttcccgagtctggcgaggttcgtatcattatgccgcggagcaattctcg
gacgatgagtacgagtgcgacgttgagaacaatacggcctcatcttctgtggccaacatc
gatgaatggaaatggaaacttagcttgctatctcgaaatgagaaggatcaagagatcatc
tcaagagataacagggacaagagagactttgagcagatctcaaaccttgccaaaaagatg
gggctctactgttcaatgtacggaaaagtggttgttgccagtaaagttccccttcctaac
taccgaccagatttggatgataaacgaccacaaagagaggttgctattcctttaagtttg
caaaggagggttgaaggtttactacaggaacactgtgatcgcattcggttaagttctgca
aaggctagtgagatttcaaatgatgccaagtctatcgacgaggttaaagatgttaatacg
gatgaatatgaaaattcttatcttgatgagtctgtgatggaaaaggtacttcagcggagg
agtttacggatgcgaaatatgcaaagagcatggcaggaatcacctgaagggaggaagata
ctggatttcaggagatctctgccagcattcaaggagaaggaaaggctactccaggcaata
gcacaaaatcaggtagtagttatatccggagaaactggatgcggtaagactacacaactt
cctcagtacctactagaatcagaaatcgaaactggtcgaggagctttctgtagcataata
tgcactcagccccgaagaatctctgctatggctgtttccgaaagagtatccatagagcga
ggagaaccccttggtgaaacagttggctataaagttcgattagaaggtatgaaagggaaa
aacacccatctcttgttttgcaccagtggtatattactccggaggcttctaagtgaccgt
aatctaaatgggattactcatgtttttgtggatgaaattcatgagcgaggcatgaatgaa
gattttctgttgattgtcttgaaggatctacttccacgccgccgggatttaagattaatc
ttgatgagtgccactttaaatgctgaacttttttccagttattttggaggagcaccaact
attcatatcccaggttttacatttccagtgagggcatactttttggaagatgtgttagaa
ataactggctataagttgacatctttcaaccaaattgatgattatggccaagagaaaacg
tggaaaacacagaaacaattagttccacgaaaaaggaaaaaccaaatcactactcttgtt
gaggatgctcttgataaatcaaccctgggaaattacagttcaaacacacgagattctctc
tcatcctggatgcctgattgcataggttttaatcttattgaggctgttttgtgccacata
tgtcgtaaggaacgacctggtgcagttttggtattcctgactggatgggaggatattagc
agtttgagggatcaactgaaagctcatccacttttaggagatccaaacagggttttgctt
ttgacatgccatggttcaatggcaacatctgaacagagactcatatttgagaaacctcct
cagaacgtccgcaaagtagttcttgccactaatatggcagaggcaagcatcacaataaat
gatgttgtttttgttattgactgtggaaaggcaaaagaaaccacgtatgatgcgttaaac
aatacaccttgtctattaccttcatggatatcacaggcatctgctcggcaaagaagggga
cgggctggccgtgttcaacctggaaaatgttatcatctttacccaaaatgtgtttttgca
gcattttctgagtatcaacttcctgaacttttgagaactccactgaattccctctgcctt
caaataaaaagtctgcaggttccgagtgtaggagaattcttgtcatctgctctacagcca
ccagagcccttggctgtacaaaatgccattggttttctaaagatgattggggcatttgat
gagaaggaaaacttgtcaaatctcggaaaatttttgtcaatgcttcccgttgaccctaag
ctaggaaaaatgctcgttatgggtgctatcttccactgctttgatcctatccttactata
gtttccggccttagtgtcagagatccttttcttctgcctcaggacaaaaaagatttagct
gggacagccaaggctagattttctgcaaaggactacagtgatcatatggcacttgttcgt
gcttacgagggatggaaagatgcagaaagagaagggtcatcctatgagtactgctggagg
aacttcctctctgcccaaacacttcaggcaattgattcccttagaagacaatttagcttc
attttaaaggatgcaggaatagttgatttagatggtagcacgagcaataagttaagccat
aaccagtctcttgttcgtgcaatcatttgttctggtctctttcctggcgtagcatctgtt
gtgcacagagagacttccatgtctttcaaaaccatggatgatggccaggtcttgctatat
gcgaattctgtaaatgcacgttatgatacaattcctttcccatggctggtattcggcgag
aaagtgaaggtcaacacggttttcttacgagattccactggcatatctgattcgatgctg
attctttttggtggagcagtgaaatgtggtgtacaggctggtcatttgaaaatgttgaat
ggctacattgaattctttatggattctagtttggcggaatgctatttgcaactcaaagaa
gaacttgataagcttattgaaaacaaacttcagaatccggggctcgatattttcaaggaa
ggcaagtatcttgttctttctgttcaagagttggtgtccggtgaccaatgcgaggggaga
tttgtcttcggtcgggaaagtaggaagcaggtgtctaccgacgacaaattcacaagggat
ggctccaacccaaagagcttgctacaaaccttgctaatgagggcaggacatacccctcca
aaatacaaaaccaaacacctcaaaacaaatgagttcagggcgctggtagagtttaaggga
atgcaatttgtcggtaagcctaagaaaaacaagcagcttgcagagagggatgctgccata
gaggctctagcttggttgacacacacctcggacaacaacactaattcagacgacgactct
cctattgatgtaactgataacatgctaaaactccttggcaaacgaaggcggtctaaaggt
cgccctggttattga
DBGET
integrated database retrieval system
