Cucurbita moschata (crookneck pumpkin): 111458622
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Entry
111458622 CDS
T05248
Name
(RefSeq) regulator of nonsense transcripts UPF2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03013
Nucleocytoplasmic transport
cmos03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111458622
03015 mRNA surveillance pathway
111458622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111458622
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111458622
mRNA cycle factors
P-body specific factors
111458622
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
111458622
NCBI-ProteinID:
XP_022957155
UniProt:
A0A6J1GZR3
LinkDB
All DBs
Position
Unknown
AA seq
1190 aa
AA seq
DB search
MDHHEDGPGVESQPKRDDEEMVARQEEIKKSFEAKMALRQSNLNPERPDSGFLRTLDSSI
RRNTTIIKKLKQINEEQREGLMDELRNVNMSKFVSEAVAAICDARLRASDIQAAVQICSL
LHKRYKDFSPCLIQGLLKAFFPGKSGDELEADRNSKAMKKRSSLKLLLELFFVGVVEDSS
IFNNIIKDLTSVEHLRDRDTTLTNLTLLASFARQARILLGLPPTGQDHEEFFKSLNITAD
QKKFFRKAFHTYYDAAAELLQSEHTSLRQMEHENAKILNAKGELSDENVSSYEKLRKSYD
HLYRNVSSLAEALDMQPPVMPEDGHTTRVSAGEDVSSPASGKDSSVLEAIWDDEDTRAFY
ECLPDLRAFVPAVLLGEAEPKANEQSAKPAENLAESEADQGHQTSIEAVELSTDGSLQDG
KINEKGKDKEEKDKEKNKDTDKEKGKEKDADRKIENEKEKLKSIEGTNLDALLQRLPGCV
SRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSVIL
LQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKIASAGLVFSCLKACLDDFTHHNI
DVACNLLESCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPER
SARVSKVRPPLHQYIRKLLFSDLDKSALENVLRQLRKLPWSECEQYLLKCFMKVHKGKYG
QIHLLASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGELYNYE
LVDSSVVFDTLYLMLVFGHGTSEQDVLDPPEDTFRIRMVITLLQTCGHYFDRGSSKRKLD
RYFIHFQKYILSKGGLPLDVEFDLQDLFAELQPNMTRYSSIEEVNAAFVELEEHERSVSS
DKSNTEKHLDAEKPMSRATSNTTSANGRDTVNGSRENGAAHGDGVDSDSDTGSGTIEAEG
RDDEESDLGNHEDGCDSEDDEDDEEAGGPASDEDDEVHVRQKVPEVDPREEANFDQELRA
VMQESMDQRRQEIRGRPTLNMMIPMNLFEGSTRDHHGRGTGGESGDEGLDEDAGGSKEVQ
VKVLVKRGNKQKTKKMYIPRDSALLQSTKQKEAAELEEKQDIKRLILEYNDREEEENNGL
GSQTMNWMQTGSNRVPTRGNNWESSGGRSGGSRHLHHRYPGSGVHYSRKK
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggaccatcatgaagatggccctggggttgaaagtcaaccgaagagagatgatgaggaa
atggttgcccgtcaggaagaaattaaaaagtcatttgaggctaaaatggctcttcgtcaa
agtaatttgaatcctgagaggcctgactctggattccttagaactttggattctagtatt
agacgcaacacaacaattattaaaaagttaaagcaaataaatgaagaacaacgagaaggg
ctgatggatgaattgcgaaatgtaaatatgagtaaatttgttagtgaggctgttgctgct
atttgtgatgccaggcttagagcttctgatatacaagcagctgttcagatctgttcgctt
cttcacaaaaggtacaaagacttctcgccatgcttgattcaaggactcttgaaagcattc
tttccaggaaagtctggggacgagttggaggccgataggaactcgaaggccatgaagaag
cgcagctctctcaaacttcttttggaacttttttttgttggagttgtagaagacagttca
attttcaataatattattaaggatcttacaagtgttgaacatttgagggatcgagatact
accctaacaaatttgactctccttgctagctttgctcggcaagcgagaatcctcttgggg
ctaccgcctactggtcaagatcatgaggagttttttaagagcctcaatattactgccgac
caaaagaaattcttcagaaaggcgtttcatacatattatgatgctgcagcagaattgctc
cagtctgaacatacttcacttcgccaaatggagcatgaaaatgcaaagatcttgaatgca
aaaggagaacttagtgatgaaaatgtctcttcatatgagaagttgcgaaaatcttatgac
catctatatcgaaatgtctcatccttagcagaagcacttgatatgcaacccccagtgatg
ccagaagatggtcacacaaccagggtttctgcaggggaagatgtttcatcacctgcttct
ggaaaggattcttctgtgctcgaagccatatgggatgacgaagacacccgggctttctat
gaatgcttaccagatctcagggcatttgttccagcggtactgttgggagaagcagagcct
aaagcaaacgagcaatctgcaaagccggcagaaaatctggctgaatctgaagcagaccaa
ggtcatcaaacatcaatagaggccgtggagctttctacggatggttcgctacaggatggc
aaaatcaatgagaaaggaaaggacaaagaagaaaaggataaagaaaagaacaaggataca
gacaaggagaaggggaaggaaaaggacgcagatagaaagattgaaaatgaaaaagaaaag
cttaaaagtattgaaggaacaaatttggatgctttgttacagagactccctggttgtgtc
agccgtgaccttattgatcagttgactgtagagttctgttatttgaattccaaggctaac
cgaaagaagctcgtcagggctttgtttaatgtacctaggacatctttggaattgctgcca
tactactcacgcatggttgcaacgttgtcgacttgtatgaaggatgtatctgtcattctc
ctccagatgttagaggaggagttcaattttttattgaacaaaaaggaccaaatgaacatt
gaaacgaagattagaaatattaggtttattggagagctctgcaagttcaaaattgcttca
gctggccttgtttttagctgtttgaaggcatgtttagatgatttcactcaccacaacatt
gatgttgcttgtaatcttcttgagtcctgtggtcgttttctttatcggtctcctgaaact
acagtgcggatggctaacatgctggagatattgatgcgcttgaaaaatgtaaaaaatttg
gatcctcgacatagcaccctggtagagaatgcatactatctttgcaagcctccggagaga
tctgcacgggtgtcaaaagttcgtccaccattgcatcagtatattagaaagttgctcttc
tcagatctagacaagtctgcccttgaaaatgtgttgaggcaacttcggaagcttccatgg
agtgaatgtgagcaataccttttaaaatgttttatgaaagttcacaaagggaagtatggc
cagattcacttgcttgcttctttaacgtcgggtttgagccgatatcatgatgaattctcg
gttgctgttgttgacgaggtattggaagaaattaggcttggactcgaagtaaatgattac
gggatgcagcaaaaacgcattgcccatatgaggtttttgggggagttgtacaactatgaa
cttgtagattcatctgttgtttttgataccctttatttgatgcttgtctttggccatggc
acatcagagcaagatgtattggatccacccgaggacactttccgcataaggatggttatc
actcttcttcaaacttgtggtcactacttcgatcgaggatcttcaaagaggaaacttgat
cgatattttatacacttccagaaatatattctcagcaaaggcgggcttccattggacgta
gagtttgacttacaggatttatttgcggaattacaaccaaacatgactaggtactcatct
atcgaagaggtaaatgcagcttttgtagaacttgaggagcacgaacgttctgtctcaagc
gacaagtccaataccgagaagcaccttgatgctgaaaagcctatgagcagagcaacttcc
aataccacctcagctaatggaagggacacggtgaatggctctagggaaaatggtgcagct
catggagacggtgttgatagtgacagtgatacaggaagtggtactattgaggcagaggga
cgtgacgatgaagagtcggacttggggaatcatgaggatggatgtgacagtgaggatgac
gaagatgatgaggaagctggtggacctgcttctgatgaggatgatgaggttcacgttaga
cagaaagtgcctgaggtagaccccagggaagaagccaattttgatcaggaactcagggct
gtaatgcaggagagcatggatcagcgtaggcaagagatacgtggtcgaccaacattgaat
atgatgataccaatgaatttgttcgagggatcgacgagggaccaccatggaagggggact
gggggagagagtggggatgagggattggatgaggatgctgggggaagcaaagaggttcag
gtgaaagttcttgttaagcgtgggaacaagcagaaaacgaagaagatgtacatccctcgt
gattccgcacttctacagagcacgaaacagaaagaagcagcagagctagaagagaagcaa
gatattaagaggttaatcttagagtacaatgaccgagaagaggaagaaaataatggatta
ggctcccaaacaatgaactggatgcaaacagggagcaatagagtccctactcggggaaac
aattgggagtcatctggcgggaggagcggtgggtcgcgtcatctgcatcatcggtatccc
ggcagtggcgtgcattacagtcgaaagaagtga
DBGET
integrated database retrieval system
