Cucurbita moschata (crookneck pumpkin): 111459280
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Entry
111459280 CDS
T05248
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03030
DNA replication
cmos03410
Base excision repair
cmos03420
Nucleotide excision repair
cmos03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111459280
03410 Base excision repair
111459280
03420 Nucleotide excision repair
111459280
03430 Mismatch repair
111459280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmos03032
]
111459280
03400 DNA repair and recombination proteins [BR:
cmos03400
]
111459280
DNA replication proteins [BR:
cmos03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
111459280
DNA repair and recombination proteins [BR:
cmos03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
111459280
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_19
Rad17
RCF1-5-like_lid
AAA_30
PTCB-BRCT
AAA_22
BRCT_2
AAA_5
AAA_assoc_2
Sigma54_activ_2
AAA_18
AAA_33
Zeta_toxin
RuvB_N
nSTAND3
RsgA_GTPase
AAA_24
AAA_17
AAA_28
Gp44_lid
RNA_helicase
AAA_14
DNAX_ATPase_lid
Motif
Other DBs
NCBI-GeneID:
111459280
NCBI-ProteinID:
XP_022957868
UniProt:
A0A6J1H1H3
LinkDB
All DBs
Position
Unknown
AA seq
975 aa
AA seq
DB search
MADIRKWFMKAHDKDNGSASKHAKPDSSSNEKSAAAELQSGKAELSGGGSTGRRITSKYF
ASEKQKSKDTTETEELPIKRKSPQDAKESPAKRKSQKDSKESLKVPPLQKLNKIDDNDDD
DAVISSSRKNLSDVTPNKKLKSGSGKGITQKPVKIEESDDEEAEGTESSRKQPSGRGRGG
RGSSAATVGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLE
REEAEDLIKRHGGRITGSISKKTNYLLCDEDIGGRKSSKAKELGTAFLTEDGLFDIIRAS
GTKAPPRQDSKKSVVKSVESPTGKSSLKVQAKTCKDLSAGASPAKQKRRTVEFSSLTWTE
KYKPKVPNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKAILLCGGPGI
GKTTSAKLVSQMLGYEAIEVNASDNRGKSDAKIQKGISGSNANTIKELISNSSLHFRTDQ
PKRPKTVLIMDEVDGMSAGDRGGVADLIASIKSSKIPIICICNDRYSQKLKSLVNYCLIL
SFRKPTKQQMAKRLSQVANAEGLQVNEIALEELAERVNGDIRMALNQLQYLSLSMSVIKY
DDIRQRLLGSMKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDMDLVPLLIQENYINY
RPSSVSKDDNGIKRMDLMARAAESIADGDIINVQIRRHRQWQLSQSSSIASCVIPASLLH
GQRETLEQGERNFNRFSAWLGKNSTFGKNMRLLEDLHVHILASRESCSRREHLRVENLTL
FLKRLTEPLHTLPKDEAVKMVVDFMSLYSINQEDFDTVMELSKFQGRKNPLDGVAPAVKA
ALTKAYKEARKTQMVRTADLITLPGIKKAPKKRIAAMLEPAEDTVEGNGGDTLAESDDEN
SLDNDDAEDSTNAEKKLQLELQNLKKEGMEVQLDLKGVENSNAKKPGGRGRGGGSQASEK
KGGGRGSGSATKRKR
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggcggatattagaaaatggttcatgaaagcgcacgataaagacaatggcagtgcgtca
aagcatgcaaaacctgattcaagcagtaatgagaaatccgccgcagctgaactacagtcc
ggaaaagcagagctaagtggtggaggaagtactggcagaaggataactagcaagtatttt
gcctcagaaaagcagaagtctaaggatacaacagaaacagaggaactcccgatcaaacga
aagtctccacaggatgctaaggagtcaccagccaaaagaaagtcccaaaaggatagtaag
gaatcattgaaagttccacccctacaaaaattaaacaaaattgatgacaatgatgatgat
gatgctgttatttcaagttctagaaagaacttgtctgatgtcactcccaataaaaagttg
aagagtggttctggaaagggaattacacagaaaccggtaaaaattgaagagagtgatgat
gaggaagctgagggcactgagtcttctcggaagcagcctagtggaaggggtaggggggga
agaggttcatctgctgcaaccgttggtggtagaggcagaggtggtgggcggggtggattt
atgaattttggggaaaggaaagatcctccacacaaaggagaaaaggaagtcccagaagga
gctcctgactgtttagccggtttaacttttgtaatcagtggaacccttgacagtttggaa
cgagaagaagcagaagatttgattaaacgccatggtggtagaataactggatccatcagc
aaaaaaacaaattatctactatgtgatgaagatattggtggccgaaaatcttccaaagcg
aaagagctgggaactgcttttctcactgaggatggcttatttgacattatccgtgcatca
ggcacaaaagctcctccaaggcaagattctaaaaaatctgtggttaagtccgtggaatct
ccaactgggaaaagttccctgaaagtacaagcaaagacgtgcaaagatttgtctgctggt
gcttcacctgctaagcaaaaacgccgaacagttgaattttcttccctaacatggacagaa
aaatataagccaaaggttccaaatgacattatagggaatcagtcgctggtcaaacaactt
catgattggttggcacattggaacgagaacttccttgatggtggaagcaaaaagaagggt
aaaaagctcaatgattctggtgccaaaaaagcaatcttgttatgtggaggtccaggcata
ggtaaaactacatcggctaagttggtcagccagatgcttggttacgaggctatagaggta
aatgccagtgacaatcggggtaaatcagacgcaaaaattcagaagggaatcagtggaagc
aatgcaaatactataaaggagcttatcagcaattcatctttgcatttcagaacggatcag
ccaaaacgtcccaaaactgtgttgattatggatgaagtagatggaatgtctgctggagat
aggggtggagtcgctgatcttattgcaagcattaaaagctccaaaattccaattatctgc
atctgtaatgaccgctacagccagaagttgaaaagccttgtgaactattgtctgattctc
agttttagaaaacctacaaaacaacagatggcaaaaagattgagtcaagttgcaaatgca
gaaggacttcaagttaatgagattgctcttgaggaacttgcagaaagagtgaatggggat
atacgtatggcactaaatcagttgcagtacctgagtctgtcgatgtctgttattaaatat
gatgatattcgccaacgacttctgggcagtatgaaagatgaagacatctcgccgttcact
gctgttgataagctgtttggttttaattctgggaagttaaggatggatgaacggatagac
ctcagtatgagtgatatggatctagtccctcttcttattcaggaaaattatattaattat
agaccaagctctgttagtaaggatgacaatgggatcaaacggatggatttgatggcccgt
gcagctgaatctattgcagatggggatataatcaatgtacagattcgaaggcatcgacag
tggcaactctctcaaagtagctcaattgcttcttgtgtaatcccagcttcattattgcat
gggcaaagagaaacgcttgagcagggagagcgtaattttaatagatttagtgcatggctg
ggaaaaaattctacttttggaaaaaatatgcggcttttggaggatttgcatgttcacatt
cttgcttctcgcgagtcctgttctaggagggaacacctacgggttgagaaccttacccta
tttctgaagaggttgactgaaccactgcatacgctgcctaaggatgaagctgttaaaatg
gttgtagattttatgagtctatattcgatcaatcaagaggattttgatactgttatggag
ttgtcaaaatttcagggtcgtaagaatccattggatggcgtggcccctgctgtcaaagct
gctctaacaaaggcatataaagaagcaagaaagacacagatggtgcggactgcagacctc
attacacttcctggaattaaaaaggcccctaagaagcgaattgcagcaatgctagaacca
gctgaggatacagtcgagggcaatggtggagacacgttggcagaaagtgacgatgagaac
tctttggacaacgacgacgcagaagattcaacaaacgctgagaagaagctgcaactggaa
cttcaaaacttgaagaaggaaggaatggaagtgcagctagatttgaaaggtgtggaaaat
tcaaacgccaagaaacctggtggcagaggaagaggaggtggttcccaggcttcagagaag
aaaggtgggggtcgaggttcaggatctgccacaaagaggaaaagatga
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