Cucurbita moschata (crookneck pumpkin): 111459846
Help
Entry
111459846 CDS
T05248
Name
(RefSeq) THO complex subunit 2-like isoform X1
KO
K12879
THO complex subunit 2
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03013
Nucleocytoplasmic transport
cmos03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111459846
09122 Translation
03013 Nucleocytoplasmic transport
111459846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111459846
03041 Spliceosome [BR:
cmos03041
]
111459846
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
111459846
Spliceosome [BR:
cmos03041
]
Complex C
Other components
EJC/TREX
111459846
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111459846
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
FapA
LIM_bind
Motif
Other DBs
NCBI-GeneID:
111459846
NCBI-ProteinID:
XP_022958699
UniProt:
A0A6J1H5V5
LinkDB
All DBs
Position
Unknown
AA seq
1886 aa
AA seq
DB search
MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKTALD
SVEFTDKMSAEELGSSFADVITQLAQDITLPGEYRVRLLKLAKWLVESAFVPLRLFQERC
EEEFLWEAEMIKIKAQELKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCHVTDAS
NNNLPGSTIGIIKSLIGHFDLDPNRVFDIVLECFELQPENSVFVELIPIFPKSHASQILG
FKFQYYQRIEVNSPVPVGLYKLTALLVKEKFIDLDSIYAHLLPKEEEAFEHYESFSSKRL
DEANRIGKINLAATGKDLMDDEKQGDVSIDLFAALDMESEAVNERSPELENNQTLGLLTG
FLSVGDWYHAHVLFNRLLPLNPVEHLPICNCLFRFIEESISSAYSIVRQHYNQSFGTSSG
ASIDTRNLPVGGSFIDLPRELFQMLAAAGPYLYRDTILLHKVCRVLRGYYMSAIEFVNSV
ESGSNPEFVLQAGSRVPHLHLKEARLKIEEALGMCILPSLQLIPANPAVGQGIWEVMNLL
PYEVRYRLYGEWEKDDEKIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANP
LTVLRTILHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLVQGGRDKLKDDGLNLS
DWLQSLASFWGHLCKKYPSMELRGLFQYLINQLKKGQGIELVLLQELVQQMANVQYTENL
TEEQLDAMAGSETLRYQATSFGVTRNNKALIKSSNRLRDSLLSKDEPKLAVPLLLLISQH
RSVVVINANAPYIKMVSEQFDRCHGTLLQYVEFLSSAVTPASAYAQLIPSLNELAQLYHL
DPEVAFLIYRPIMRLFKCQGGSDIFWPLDGNDANVASNNSDSESAECSADVVLELGPSQK
PVRWSDLLDAVKSMLPPKAWNSLSPDLYTTFWGLTLYDLYVPQSRYESEIAKQHSALKAL
EELSDNSSSAINKRKKDKERIQESLDRLSNELNKHEENVASVRRRLSREKDKWLSSCPDT
LKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMIC
CCTEYEAGRLGRFLYETLKIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIK
VHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISNVFPVTRKSGINLEKRVAKIKSDE
REDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKTAPSLASKSSASNLAATQSNSVYS
SQNEHGGGKPTAVPSSDSGNMAKDHSLRSRTSDTRTDKIDGFSVPKSELGHGKLKGTSLN
GPDSQPLVPSTSVHSGSLRVVEGPKPGDDLSRTSNEGSSKVIFKTSSESEQLRVSAKRNA
PAGILSKAPKQDTTKDEIRSGKAASKNHGSSTSDRELPIHATDGGRHGSSYKTSSVMPND
YTQSSLTRGLSSSLKASDGHAIELKAESGVGRTSDSRASSVKENGTEALEVAKSSSSRLA
HSPRHDNSASGSRSSDKLPKRASPAEEPDRQGKRRKGDGESRDVDGDFRNPDKDRSIDTR
SVDADKIGMDEQSGYRGSDKPLERTKDKVNERYDRDYKDRAERSEKSRGDDPSVEKTRDR
SIERYGRERSVEKVERVSDRYPDKSKDERDKDDRSKLRYNDTATEKSHVDDRFHRQSLPP
PPPLPPHMVPQSVNSGRREEDADRRFGTTRHSQRLSPRHEEKERRQSEENLISQDDAKRR
REEEFRERKREEREVGISLKVDDRERERERDKANLLKEDMDAAAASKRRKLKREHLSLAE
AGEYSPAGAPPSLVGGGVSQSYDGRERGDRKGVMMQRASYLDEPGLRIHGKEVVNKMTRR
EADLMYDREWDDDKRMRADQKRRHRK
NT seq
5661 nt
NT seq
+upstream
nt +downstream
nt
atggctctccctccccttgagtgtatgtatgtcgttgaaagcaatcttcgcgaatggaag
tccggaaactcgagctttagggttcccaaccctgtccctgtgcttcgcttcctttacgag
ctttgctggaccatggttcgaggtgaattgccgttccagaagtgtaaaacagcattggat
tcagtagagttcacggacaaaatgtctgcggaggagttaggatcgagttttgctgatgtc
attacccaattggcccaagatatcacattacccggagagtatcgtgttcgtcttttaaaa
ttggctaaatggctggttgaatctgcatttgttccattgaggctttttcaagaacggtgt
gaggaagaatttttatgggaggctgaaatgataaagattaaggcgcaggaattgaaaagc
aaagaggtcagagtaaatactcgtcttctttatcagcaaacaaagtttaatcttctgcgt
gaagaaagcgagggctatgccaagttggtaacacttctttgccatgtcactgacgcttca
aataacaatttgccgggttcaacaattggtattataaagtcattgattgggcattttgat
ttggacccaaaccgtgtgtttgacattgtcttggagtgttttgaacttcagccagaaaat
agtgtttttgtggagctaattccaatatttcccaagtctcatgcttcacaaatccttggg
ttcaaattccaatattatcagcgcattgaagtgaactcgccagtgccagttgggctttat
aaacttacagctttactagtgaaggaaaaatttattgatctggatagcatatatgcacat
ctacttcctaaggaggaggaggcatttgagcattatgagtccttttcttccaaacgactt
gatgaggctaacagaataggtaaaataaatcttgcggcaacgggaaaagatctaatggat
gatgagaagcaaggagatgtaagcattgatctttttgctgctcttgatatggaaagtgag
gcagtcaatgaaaggtctccagagctggaaaataatcaaacattgggcttgcttacagga
tttctttctgtgggtgactggtatcatgcacatgtactgtttaatcggcttttacctctc
aatccagtggaacaccttccaatctgtaactgtttgtttaggttcattgaagaatcgatc
tcctctgcgtactctattgttcgtcaacattataatcagagctttgggacctcttcagga
gctagcattgataccaggaatttgccggttggtggttcttttatagatcttcctagggaa
ctttttcagatgcttgcagctgctggaccttatctctaccgtgatacaattttgctgcat
aaggtctgtagggtgctgagaggttattatatgtcggcaattgagtttgtcaacagtgtg
gaaagtggttcaaatcctgaatttgttctgcaagctggtagccgggttcctcatcttcac
ttgaaggaagctagattgaaaattgaggaagctttaggaatgtgtatacttccttcgtta
cagttgatacctgccaatccagctgttggtcaaggaatatgggaagtaatgaatcttctt
ccgtatgaggtgcggtatcgtttatatggtgaatgggagaaagatgatgagaagattcca
atggttttggcggcaaggcaaaccgcaaagttggacacacggaggattttgaagcggttg
gctaaggaaaatttgaagcaattgggtaggatggttgcaaaacttgctcatgccaatccg
ttgactgtccttcgcactatattacaccagattgaggcatatagggatatgattactcct
gtagtagatgcattcaagtatctgactcagcttgagtatgacatattagaatatgttgtg
attgaacgtttggtgcaaggagggcgtgataagttgaaggatgatggccttaatctgtca
gattggctccagtcattagcttcattttggggtcacctgtgtaagaagtacccatctatg
gagctaaggggtttgtttcagtatctcattaatcagttgaaaaaaggtcaaggaattgaa
cttgttctcctgcaggaacttgttcaacaaatggccaatgtccaatacacagaaaaccta
actgaggaacagttggatgctatggcaggaagtgaaacacttcgttatcaagcaacttct
tttggggttactcgaaataacaaggcgttgatcaagtcaagcaacagactgcgtgactcc
ttgctttctaaggatgaaccaaaattggcagtccctctcttgctacttatttctcaacac
cgatcagtggttgtcataaatgcaaatgctccttatattaagatggtcagtgaacaattt
gatagatgtcatggaactctgcttcaatatgtggaatttcttagtagtgcagttacgcct
gcatcagcttatgctcagttgattccctctctcaatgagcttgcccagctttatcaccta
gatcccgaggttgctttcctgatatatcgaccgataatgaggttatttaagtgtcaaggt
ggttcagatatcttctggccactggatggcaatgatgcaaatgttgcaagcaataattct
gattcggaatcagcagaatgttctgcagacgttgttttggaacttggtccttcacagaaa
cctgtgaggtggtcagatctcctcgatgctgtaaagtctatgttacctccaaaagcttgg
aatagcttgtctccagatctctatactacattttggggtctcacgctctatgatctttat
gttcctcagagtagatatgaatctgaaattgctaagcagcattctgctcttaaagcttta
gaagagctttctgataactcaagttctgcaatcaataaaaggaagaaagacaaagaaaga
attcaagaatctcttgatcgcttgtccaatgaactaaataagcatgaagaaaatgttgct
tccgtacgcagacgactttctcgtgaaaaggataaatggttgagctcctgccctgatact
ttgaaaattaacatggagttccttcagcgatgtatttttccccgctgtacattcagtatg
cctgatgctgtctattgtgctatgtttgtgcacactcttcattcccttggaacaccattt
tttaatacagtcaaccatattgatgttttgatatgtaaaaccttgcaacccatgatatgc
tgctgcacggaatatgaagcaggcaggcttggaaggtttttatatgagacactaaagata
gcttattattggaagagtgatgaatccatttatgaacgtgaatgtggaaatatgcctgga
ttcgctgtctattataggtatccaaacagtcaaagagtaacgtacggccagttcatcaag
gttcattggaagtggagtcaaagaattacacgattactcatacaatgcttggaatctaca
gagtacatggaaattagaaatgctcttataatgttgacaaaaatttccaacgtttttccc
gtcactagaaagagcggaatcaaccttgagaaaagggtcgctaagatcaaaagtgatgaa
agagaagatctgaaggtgttagctactggtgttgccgcagctttggctgctagaaagcct
tcatgggttacagatgaagaatttggcatgggttatcttgaattaaagactgcaccttct
cttgcatcaaagtcttcagctagtaatttagctgccacccaaagtaattccgtttattct
tcccaaaatgaacatggtggaggaaagcctactgccgtcccaagttcagattctggaaat
atggccaaagaccattcattgaggtcacgaacttctgacacgaggacggataaaatagat
ggtttttctgttccaaaatctgaactagggcatgggaaactcaaaggcacttcattgaac
ggaccagattcccagccacttgtgccctcaacttctgtgcattcaggatcgttaagagtt
gtggaaggtccaaaaccaggtgatgacttaagtaggacttcgaatgaaggctcatcaaaa
gttattttcaagacctcttctgaatccgagcagttgagagtttcagcaaaacgaaacgca
cctgctggtattcttagtaaagcaccaaaacaagataccacgaaagatgagattagatct
ggaaaagctgctagcaagaatcatgggtcttccacaagtgatcgggagcttccaattcat
gcaacagacggtggtaggcatggaagttcttataaaacttcttcagttatgccaaatgac
tatacgcaaagttcattaactagaggcttgtcctcatcattaaaagcttcagatggtcac
gctattgaattgaaggcagagagtggagtagggaggacttctgatagtagggcttcgtca
gtaaaggaaaatggtactgaagctcttgaagttgcaaaatcctcttcttccagacttgct
cattctcccagacatgataattctgctagtggttctaggtctagtgataaactgcctaaa
agagctagtcctgcagaagaaccagacagacaaggtaaacgtcggaaaggagatggtgaa
agtagagatgtagatggggattttcgtaaccctgacaaagatagatccatagacacacga
tctgtagatgctgataaaataggaatggatgaacaaagtggttacagaggttcagataaa
cctctggagagaacaaaagataaggtaaatgaaagatacgatagggattacaaagatcgg
gcagagcgttctgagaaatcccgtggagatgatccatcagtagaaaaaacaagagacaga
tcaatagaaagatatggaagagaacgctcggttgagaaagtggaaagagtttctgatagg
tatcctgacaaatctaaggatgaaagagataaagatgataggagtaagttacgatataat
gatacagctacagaaaagtctcatgttgatgatcggttccacagacagagcttgcctcct
ccccctcccttgcctcctcacatggtccctcaatctgttaatagtgggagaagagaagaa
gatgcagatagaaggtttggaactactagacacagtcaaaggctttctcctagacacgaa
gagaaggaacggagacaatcagaggaaaatttaatttcacaggatgatgcaaaacgcaga
agagaggaggaatttcgagaaagaaagagagaagagagagaggtggggatatcattgaag
gtggatgacagggagagggaaagggagagagacaaggcaaaccttttgaaggaggacatg
gacgctgctgctgcctccaagaggcgaaaacttaaaagggagcatctgtcattggctgag
gctggtgagtattctcctgctggcgcaccgccatctctggttggtggtggcgtgtctcaa
tcttatgatggacgagaaagaggagacaggaagggtgtaatgatgcaacgtgccagttac
ttggatgagccaggcttgagaattcatggtaaagaagttgtcaacaagatgaccagacgt
gaagccgatttaatgtacgatcgggaatgggatgatgataaaagaatgagggcagaccaa
aagcggaggcaccggaaataa
DBGET
integrated database retrieval system
