Cucurbita moschata (crookneck pumpkin): 111460149
Help
Entry
111460149 CDS
T05248
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111460149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111460149
03041 Spliceosome [BR:
cmos03041
]
111460149
03009 Ribosome biogenesis [BR:
cmos03009
]
111460149
03016 Transfer RNA biogenesis [BR:
cmos03016
]
111460149
Enzymes [BR:
cmos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111460149
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
111460149
Spliceosome [BR:
cmos03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111460149
Complex C
U4/U6.U5 tri-SnRNP related factors
111460149
Ribosome biogenesis [BR:
cmos03009
]
Eukaryotic type
Pre-60S particles
Helicases
111460149
Transfer RNA biogenesis [BR:
cmos03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
111460149
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
Prophage_tailD1
Motif
Other DBs
NCBI-GeneID:
111460149
NCBI-ProteinID:
XP_022959042
UniProt:
A0A6J1H3H0
LinkDB
All DBs
Position
Unknown
AA seq
994 aa
AA seq
DB search
MGSSKRKVVEDTPRESSPKHQRTNEPAMVEDEPVACVHDVSYPEGSYNPLPSINLSSTGE
KLEPAKVFPFSLDPFQSEAIKCLETGESVMVSAHTSAGKTVVALYAIAMSLRNKQRVIYT
SPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEITREVAW
IIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLSATVPNAKEFADWVAKVHQQPCHIVY
TDYRPTPLQHYIFPSGGEGLYLVVDERGHFREDSFQKALNALVPASDGYKKKENNGKWQK
SLTLGKTNEESDIFKMVKMIIQRQYDPVIIFSFSKRECEFLAMQMAKLDLNGDDEKANIE
TIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFA
TETFSIGLNMPAKTVVFSNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDERGICILMVDE
KLEPSTAKMMLKGNADCLNSAFHLSYNMLLNQIRCEDGNPENLLRNSFYQFQADRNIPNL
EKQVKSLEEERDSIVIEEEDNLKNYYDLLKQYKSLKKDIRDIVLSPRYCLPFLQPGRLIS
IECDSNNEISSTFSIKDQFTWGLIINFQRMKGVSEDDASMKPESANYTVDVLTRCVVSKD
GIGKKNVKIVQLKEHGEPHVVSIPISQIRTLASIRILIPNDLLPLEARENTLKKISEVLS
RFPKGVPLLDPEEDMKIQSSSYRKAVRRTEALESLFDKHEVAKSALVDQKLKALHLKQEL
TAKIRSIKKTMRSSSALAFKDELKARKRVLRRLGYITSDDVVELKGKVACEISSANELTL
SELMFNGVFKDIKVEEIIALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKAQLE
CKVEIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLT
LAAKSIGETELETKFEEAVSKIKRDIVFAASLYL
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgggctcttcgaagagaaaagtggtcgaagatacgcccagagaatcttcaccgaagcac
caaagaaccaatgaacctgccatggttgaggacgaaccagttgcgtgtgtccatgatgtg
tcctaccccgagggttcttataatcctctcccatcaataaatctctcttccactggagag
aagttggaaccggctaaggtgttccctttctctctggacccctttcagtccgaggctatc
aagtgcttggagactggagaatctgttatggtgtctgcccatacatcagctggtaaaact
gttgtggcattgtatgcaattgccatgtctctccggaataaacagcgtgtcatatatacc
tcgccaatcaaggccctcagcaaccaaaagtatagggaatttaaagaagaattctcagat
gttggtttaatgactggggatgtgactattgaaccaaatgcttcttgtctggtcatgacc
acagaaatttggcgtagcatgcagtacaaaggatccgaaattacacgggaagtggcatgg
attatctttgatgaagtacattacatgcgtgatcgggagcgaggtgttgtttgggaagag
agcattgtcatggctccaaagaatgctcgatttgttttcctctcagcaactgtgccaaat
gcaaaagaatttgctgattgggttgcaaaggtccaccaacaaccatgtcatattgtttat
actgactatcgaccaacacctcttcaacactatattttcccatctgggggtgagggctta
tacttggtggttgatgagaggggtcattttcgtgaggatagctttcaaaaagctttaaat
gcacttgtccctgctagtgatggctacaagaaaaaggagaataatgggaagtggcagaag
agtttgactttgggcaaaacgaatgaagagagtgatatatttaagatggtgaagatgata
attcaacgtcaatatgatccagttataattttcagctttagcaaaagagaatgtgaattt
cttgcaatgcagatggcaaaattagatctaaatggcgatgatgaaaaggcgaacatagaa
accatcttttggagtgctatggatatgctttcagatgatgataagaagctccctcaggtt
tcaaatatgttgcccctcttaaagcgtggaataggggtccaccattctggcttgctccct
attttgaaggaggtgattgagatattatttcaagaagggctaatcaagtgtttgtttgcc
acagagacattcagcattggtttaaacatgcctgcaaaaactgttgtcttcagtaatgtt
cgtaagtttgatggggataaatttagatggttatcaagtggtgaatatatacaaatgagt
ggtcgagctggacggagaggaattgatgaacgagggatatgtatccttatggtggacgag
aagctggagccatcaactgctaaaatgatgcttaaaggaaatgcagattgcttgaacagt
gcttttcacttgagctataacatgctcttgaatcaaatccgttgtgaagatggcaatcct
gaaaatctgctgcgtaattccttctatcagttccaagccgaccgcaacatacctaacctc
gagaaacaagtgaaaagccttgaagaggagagggattccatagtgattgaagaggaagat
aatttgaagaattattatgatttgctaaagcagtacaaaagtttgaagaaggatatccgt
gatattgtgttgtctcctagatattgcttaccatttctgcaacctggcaggcttatatct
attgaatgcgacagtaataatgagatttcttcaactttttccatcaaggaccagtttact
tggggattaataattaattttcagaggatgaaaggtgtttctgaagatgatgctagtatg
aaaccagaatctgcgaactacactgtggacgttcttacaagatgcgttgtcagtaaagat
ggcatagggaaaaaaaatgttaagatcgttcaattgaaagagcatggagaacctcatgtt
gtttccattccaatctctcagattagaactttagctagtattcgaatactcatacccaat
gatcttttgccgttggaagctcgagaaaatacattgaagaagatttctgaagttttatca
agatttccaaagggagtgccccttctagatccagaagaggatatgaaaattcaaagtagt
tcttacagaaaggctgtgcgtagaacagaggctttggagagcctgtttgacaagcacgag
gtggcaaaatcagcacttgttgatcagaagctcaaagcattacatttgaagcaagagcta
acggctaagatcaggtcaattaagaaaacaatgcgttcttcttctgcattggctttcaaa
gatgaactgaaggccaggaagcgagtattgcggaggcttggttacatcacaagtgatgat
gtcgtggaattgaaaggcaaggttgcttgtgaaatcagtagtgcaaatgaattgactctt
tcagagctgatgttcaatggggttttcaaggacataaaagtggaggaaatcatcgctctg
ctatcttgttttgtgtggcaagagaaacttcaggatgcagcaaagcctagggaagagctt
gagctgcttttcattcaattacaagacacagctcgaagggttgccaaggctcagcttgaa
tgcaaggtcgaaattgatgtggaaggctttgtgagttcgtttagaccggatattatggag
gctgtatatgcttgggcaaagggatccaaattctacgagataatggaaataacacaggtt
ttcgaggggagcttgattagagcaattagaagacttgaagaagttctgcaacaactaact
ctagcagcaaagtccattggtgaaactgaacttgaaaccaagtttgaagaagctgtttcc
aaaatcaagagggatatcgtctttgctgcttctctatacttgtag
DBGET
integrated database retrieval system
