Cucurbita moschata (crookneck pumpkin): 111460682
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Entry
111460682 CDS
T05248
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111460682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmos03041
]
111460682
03009 Ribosome biogenesis [BR:
cmos03009
]
111460682
Enzymes [BR:
cmos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111460682
Spliceosome [BR:
cmos03041
]
Complex A
U2 snRNP components
U2 related factors
111460682
Complex B
111460682
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
111460682
Ribosome biogenesis [BR:
cmos03009
]
Eukaryotic type
90S particles
Helicases
111460682
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
SRP54
nSTAND3
ABC_tran
FtsK_SpoIIIE
T2SSE
AAA_33
Flavi_DEAD
AAA_30
AAA_7
NACHT
Motif
Other DBs
NCBI-GeneID:
111460682
NCBI-ProteinID:
XP_022959672
UniProt:
A0A6J1H570
LinkDB
All DBs
Position
Unknown
AA seq
731 aa
AA seq
DB search
MGAERKRKVSLFDVVDDSSVSASKKLNGFGAPFNNGGGNAGNSLINRWTGRQFSQRYYEI
LEKRQTLPVWHQKEEFFQALKGSQTLILVGETGSGKTTQIPQFVLEAVDLDSPDKRKKMM
IACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMT
DPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQGYFNGA
PLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHLCEPPGDILVFLTGEEEIEDACRK
INKEVANHGDQVGPVKVVPLYSTLPPAMQQKIFEAAPPPVKEDGPPGRKIVVSTNIAETS
LTIDGIVYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTE
KSFQNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLG
ALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFKCSNEILSISAMLSVPNCFVRPREAQ
KAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDQSWCYENFVNHRAIKAADNVREQLVRI
MARYNLKLCSTDFNSRDYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCL
DHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLLDVAAHYYDLANFPQCEAKRVLERLYKKW
EKDREESRNRK
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcggagaggaagaggaaggtcagcttatttgatgtggtggacgattcctcggtc
tccgcaagtaaaaaattgaacggctttggagcaccgttcaacaatggaggtggcaatgcg
ggcaatagtctgatcaacaggtggactgggaggcagttctcgcagaggtactatgagatt
ttggagaagaggcagactcttcctgtttggcatcagaaagaggagtttttccaggctttg
aagggcagtcagactttgattttggttggtgagactggtagtggtaaaacaactcagatt
cctcaatttgttttggaagccgttgacctggatagtccagataaacgtaagaagatgatg
attgcatgcactcagcctcgtagggtggcagcaatgtcagtttctcgacgtgttgctgaa
gagatggatgtaactattggagaagaggtgggttacagtatccgttttgaagactgtagt
agtgccagaacagttttgaagtatctaactgatggtatgcttttgagagaagcaatgaca
gatcctcttttagaaaggtataaggtaattattcttgatgaggcacatgaaagaacatta
gcaacagatgttctttttgggcttttgaaagaagttttgagaaataggcctgacctaaag
ctggtcgtcatgagtgctacacttgaggctgaaaagttccagggttattttaatggtgct
ccacttatgaaagttcctggtaggcttcatccagtggagatattttacacacaggaacct
gaaagggactatcttgaagctgctattcggacagttgtacagattcatttgtgtgaacct
ccaggtgatatacttgttttcctcactggtgaggaggaaattgaagatgcatgtcgcaag
ataaataaagaagttgcaaaccacggagaccaggtagggcctgtgaaagtggtgcctcta
tattcaacccttcctccagctatgcagcagaagatatttgaagctgctccacctcccgta
aaagaggatggacctcctggaaggaagattgtggtctccacgaacattgcagagacttca
ttgaccatagatggcatcgtttatgttattgaccctggcttttcgaaacagaaagtttat
aaccctcgagtacgtgttgaatcattattggtatctcctatatcaaaggctagtgcacat
cagagatcaggtcgtgctggaagaactcagcctggaaaatgttttagactttacacggaa
aagagtttccaaaatgatttgcagccacagacatatcctgaaattttgagatcaaacctt
gccaatactgttcttaccttaaagaagttggggattgatgacctcgtgcattttgatttt
atggatccacctgctcccgagacattgatgcgagctttagaagttctgaattatttaggt
gcattggatgatgatgggaatctaacaaagcttggggaaattatgagtgaatttccatta
gatcctcagatgtcaaagatgctcgttgttagtccagaattcaaatgttcaaacgagata
ttatcaatttctgccatgctttcagtacccaattgctttgtccggcctagggaggctcag
aaggctgctgatgaagcaaaagctaggtttggccacattgatggagatcatctaacgctc
ttgaacgtgtaccatgcttacaagcaaaacaatgaggatcaatcatggtgttatgaaaac
tttgtcaatcacagggcaataaaggccgcagataatgtcagagagcaactagtccgcatc
atggctaggtataacctcaaattatgcagcacagatttcaacagccgtgactactacgtt
aacatacgaaaggctatgctttctgggtatttcatgcaagtggctcatttggagcggact
ggacactacttgacagtgaaggacaaccaggtggtacacttacatccatcaaattgcttg
gaccataaaccagagtgggtcatttataacgaatacgtcttaacaagtaggaatttcatc
cgtacagtgacagacatccgtggtgaatggctattggacgtagcagcacattattatgat
ctggcgaacttccctcaatgtgaggccaagcgtgttcttgaaaggctttacaagaagtgg
gaaaaggatcgtgaagaaagcagaaatagaaaatga
DBGET
integrated database retrieval system
