Cucurbita moschata (crookneck pumpkin): 111460772
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Entry
111460772 CDS
T05248
Name
(RefSeq) protein LHY-like isoform X1
KO
K12133
MYB-related transcription factor LHY
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
111460772
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cmos03000
]
111460772
Transcription factors [BR:
cmos03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
111460772
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-bind_7
KIF2A-like_1st
Motif
Other DBs
NCBI-GeneID:
111460772
NCBI-ProteinID:
XP_022959822
UniProt:
A0A6J1H979
LinkDB
All DBs
Position
Unknown
AA seq
732 aa
AA seq
DB search
MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHSRFLEALKLYGRAWQRIEEHIGTKTAVQ
IRSHAQKFFSKLEKEALVKGIPVGQALDIDIPPPRPKRKPSNPYPRKSPISKLGANDGKL
STLVSSSQSKQILDLEKEPMNEATSGEEQATNEKDTHDDNCSEVFTLSGEANSFSLKNQN
SVPVQVKFNDSCAFREFVPSVKEPLHEKGMGKLSELVISSASREKLVSAEKKEALSCALS
GDEMQAAHNYPRHVPVHVVDGSLGANVQGSLRDASLQESAFHPSMEIQGERSILQNPSGS
VSFEHQHNAPGSIYPSYPPIHPTPFTLLHPNQEHYKSVLQMSSAFLNLIVSTLQQNPAAH
AIASLTATCWPYVNPETSADAPACDTEGFKTKQMNPTPSKEAIAAATVAAATAWWAAHGL
PPLCSPLHSAFTSAAISAPVVQSSDACPNSESKDKAESSLQNAALQNQQLDAEQSEVLTA
HQSDSKSPTHSSSDSGNGGADANATVKTVHNEKTPAEVEFHDSNEEKRGKQVDRSSCGSN
TPSGSDREIDATEKNDEKEEDKELETNHPATESSIRRSRSIGNTSESWKEVSDEVKRGRL
AFQALFTRDVLPQSFSPPYDVESENKENENVEKVSQSVDKDNSGASVLDLNSNTCGTSTS
AIGVNNGEGEFLSIGLGNGTPKVCRTGFKPYKRCSVEAKEKRMTATSSNHSEEGGQKRLR
LDQKASNCCMYF
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggatcccaattcctctggagaagacttggtttttaagaccaggaagccatatactatt
acaaagcaacgagagcgctggacggaggaggagcacagtagatttctagaggcgctgaag
ctctatggccgagcatggcagagaattgaagaacatattgggaccaaaacagcagttcag
atacggagtcatgcacaaaagttcttttcaaagttggaaaaagaagcacttgttaagggg
attcctgtaggacaagctcttgatatagacattccaccacctcgtcctaagaggaaacca
agtaatccttatccaaggaagtctcctatatcaaagttgggagcaaatgacgggaagctc
tcgactctggtgtcttcttcacagagcaaacaaatcttagatttggagaaagagccaatg
aatgaggctactagtggagaagaacaagcaactaatgaaaaggatactcatgacgataat
tgctcagaagtatttaccctatcaggagaagctaactccttttctttgaaaaaccaaaat
tctgtacctgtgcaagttaaattcaatgactcgtgtgctttccgggagtttgtgccctca
gttaaagagccactccatgaaaaaggcatgggaaagctttcagaattggtgatttcaagt
gcttcacgcgaaaaattggtgtctgctgaaaagaaagaagctttaagctgtgcactgtct
ggggatgaaatgcaagctgctcataattatccaaggcatgtgcctgtgcatgtggtagat
ggaagcctgggagcaaatgttcaggggtctttaagagatgcttcactgcaggaatccgct
ttccatccatccatggagattcaaggagagcgtagtatacttcagaatccatctggttct
gtttccttcgaacatcaacataatgcacctgggagcatttatccatcatatccacctatt
catcctactccatttaccttacttcaccctaaccaggaacattacaagtcagttctccag
atgtcttccgcatttctgaatcttattgtgtccacccttcaacaaaaccctgcagcccat
gcaatagcaagtcttacagcaacctgttggccctatgtgaatcctgaaacttctgcagac
gccccagcgtgtgatacagaaggttttaaaaccaagcaaatgaacccgacccctagtaag
gaagccattgctgcagcaactgtagcagctgcaactgcatggtgggcggcccatggattg
ccacctttatgttctcctttgcattctgcctttacgagcgctgctatatcagctcctgta
gtacaatcatcagatgcctgtccaaattccgagtccaaggacaaagcagaaagttcccta
caaaatgctgctttgcaaaatcagcagctggatgcagaacaatcagaggttttgactgct
catcagtcagattccaagtcacctactcattcatcatctgactctggtaatggaggtgca
gatgcaaatgctacggtgaaaactgtccacaatgagaagacaccagctgaggttgagttt
catgattcaaacgaggagaagagaggaaaacaagtagatcgttcctcatgtggttccaat
acaccatctggaagtgatcgagagatagatgcaacagaaaagaacgatgaaaaagaggag
gacaaagagcttgagacgaaccatccagctaccgagtccagtattcgtcgtagtagaagc
atcggtaacactagtgagtcttggaaggaggtttctgatgaggtaaaaagggggcgtctg
gcctttcaagcactcttcactagggacgtattgcctcaaagtttttcacctccatatgat
gtagaaagtgagaataaggagaatgagaacgttgagaaagttagtcagagtgtagataaa
gataatagtggcgcatcagttttggaccttaacagcaacacttgtggtacttctacatca
gcaataggtgtcaataacggagagggggaatttctctcaattggacttggaaatggaacc
cccaaggtttgtcgaacaggatttaagccttacaaaagatgttcagtggaggcaaaggaa
aagagaatgacagcaacatccagcaaccacagcgaggagggaggccaaaaaagactacgt
ctggaccagaaagcctcaaattgctgcatgtatttctaa
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integrated database retrieval system
