Cucurbita moschata (crookneck pumpkin): 111461373
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Entry
111461373 CDS
T05248
Name
(RefSeq) endoribonuclease Dicer homolog 2 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cmos03036
]
111461373
Chromosome and associated proteins [BR:
cmos03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
111461373
microRNA pathway
RISC loading complex
111461373
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Helicase_C
DEAD
Dicer_dimer
PAZ
ResIII
Cas3-like_C_2
SNF2-rel_dom
dsrm
Helicase_C_2
AAA_22
Dicer_dsRBD
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
111461373
NCBI-ProteinID:
XP_022960644
UniProt:
A0A6J1H869
LinkDB
All DBs
Position
Unknown
AA seq
1392 aa
AA seq
DB search
MASYMELESEQLVADPIPFARSYQLEGLEKALKQNTIVFLETGSGKTLIAIMLLRSFAHQ
LRKPSPFFAVFLVPQVVLVTQQAEALKMHTNLSVGLYYGGMGVDFWDGEVWKQEIDKHEV
LVMTPAILLNCLRHSFIQLSMIKVLIIDECHHARGKHPYACIMSEFYHRQLPLDKSNLPR
VFGMTASPIKSKGGNSELMCWQHIQDLESLLNSKVYTCSGESELAKFVPISTPKFKFYMH
KDIPYALYEQLAEGLKVLKLKHERSLENPDLNPSKVEPTRKRISKAFLALMYCLDELGLW
LAWKAAESLSWMEDDFSPWETLDIFGEAIVKSFFSDALTLLASPFKSGYSYQPIGDNVEA
DMAVGLMTAKVVCLIESLLEYRSVEDIRCLVFVERIVTAVALQTLLSVLLPKHTCWKAKY
IAGRNSGLQTQTKQKQNEIVEEFRCGKVNIIVATSILEEGLDVQSCNLVIRFDPSSTVCS
FIQSRGRARMQNSDYILMVKSGDSATLSRLQRYLDSGETMRNESLRHASLPCLPFRSDYN
EESYRVESTGAVVTLSSSVGLIYFYCSRLPSDCYFKPTPRWNSETRTLQLPKSSPCQTFS
SKDDAKYPKQSACLEACKQLHKYGALTDNLVPDMVAEEAVAQGVGNKPLDEEQPIYVPPE
FVHCCPNNSSGVYHCYLIELKQNFNYDISVHNIVLAMRTELEFEVQSMCHDMDVDRGSLD
VNFKYIGIIKLSPEQVLLCRRFQATIFRVLLKHKWDIELSKNDEICLGDSPTVDYLLLPS
TGVGLISWETVLSVLDSSIKYCVHRGISSFKGFAYDVQTQNGLDCICRLENSIVYTPHNG
YVYCIMGALSALDGNSLLKLRKNETMLSYKEYYKMNHGIDLQYEKQPLLRGKKIFTVHNH
LKKCRKREEGVSSNSLVELPPELCSIIMSPISINTIYSYSFLPSIMHRLESMLIASNLKK
LNSDHCMQNDIPTVKVLEAITTKSCQEKFHLESLETLGDSFLKYATGQHLFKAFQKDHEG
LLSLKKDRIVCNAALCKLGCEHKISGFIRDEAFDPQKWAIPGDTLEVHQLTEEVLSNGRK
VYVRRKRKVKGKRIADVVEALIGAYLSTGGERAAIQFLNRIGIEVYFDIVPYERPFSVDA
HKLINVRHLESLLNYTFNDPSLLLEAMTHGSYMLPEIPRCYQRLEFLGDSVLDYVVTVHL
YNKYPGMSPGLLTDMRSASVSNDCYARTAVKAQLYKSILHLSHDLHRHISSTLRNFEMSS
SEATYGWESETSLPKVFGDVIESLAGAIYVDSGYNKDKVFESIRPLLEPLISPETVKMHP
RRELNEVCQKMNYNLKKTVTSRVNGKTHVTVEVEANGRIFKHTAISLDKETGKKVASKEV
LKSLKDSYGPFL
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgtatatggagttagagagcgagcagctagtggctgatccaataccatttgct
agaagttatcagttggaaggattggaaaaagcacttaaacagaacacgatagtgtttttg
gaaactggatctggcaagactttgatagccatcatgcttttgagaagctttgctcatcag
ctgcgcaaaccttcacctttctttgctgttttcttagttccacaagttgttttggtcact
caacaagctgaagctctgaagatgcataccaacttgagcgttggcttgtattatggaggt
atgggtgtagacttttgggatggtgaagtttggaagcaagaaatagataaacatgaggtg
cttgtgatgactcctgcaattttgctaaattgcttgaggcatagcttcattcagctaagc
atgataaaggtcttaataatagatgaatgccatcatgccagaggcaaacacccttatgct
tgtattatgtcggagttctatcaccggcagctacctcttgataaatctaatcttcctaga
gtatttggaatgactgcttctccaataaagtcaaagggtggcaactcggagttaatgtgt
tggcaacatatacaagaccttgaatccttattgaactcgaaggtgtatacttgttccggt
gaatccgagctggccaagtttgtacctatttcaactccgaagttcaaattttatatgcac
aaggacatcccatatgcattatatgaacaattagcagagggtttgaaggttttgaaatta
aagcatgaacgctctctggagaatccagatctcaatccttccaaggtagaaccgactaga
aaacggatatcaaaagctttcttggctttgatgtattgcttagatgaacttggtctttgg
ttagcctggaaggctgctgagtctttatcgtggatggaagatgatttttctccatgggaa
acgttggatatatttggtgaggcaatagtgaaaagtttcttttctgatgccttaacgcta
cttgctagtccatttaaatcaggatattcctatcagcctataggtgataatgttgaggct
gatatggctgtaggtcttatgactgcaaaagttgtttgtctcattgaatcgctacttgaa
tacaggtctgtcgaggatataagatgtctagtatttgtagaaagaatcgttactgctgtg
gcccttcaaacactattgagcgtattgctcccaaaacacacttgctggaaggccaaatat
atagctggaaggaactcgggattgcaaacccagacaaagcagaaacaaaatgaaattgtg
gaagaatttcgttgcggcaaggtcaacatcattgttgcaacctcgattctagaagagggt
ttggatgtccaaagttgcaatttagtaattagattcgacccgtcatccacagtatgtagc
ttcatacaatctagaggacgtgctaggatgcaaaactcagattacatcttgatggtaaag
agtggggattctgccactctctctcgacttcaaagatatcttgatagtggtgaaactatg
cgaaacgaatctctacgccatgcctctcttccgtgcttaccttttagaagtgattacaat
gaggaatcctatcgtgttgaaagcactggtgcggttgtgactctaagttccagtgttggt
ttgatatacttctattgctctcgccttccttctgattgttattttaagccaacaccacga
tggaattcagaaactcgcaccttgcaacttcctaagagctctccttgtcagaccttttcc
agtaaagatgacgctaaatatcccaagcaaagtgcctgtttagaagcatgcaaacaactt
cataagtatggtgctttgacagataaccttgtccctgatatggttgctgaagaagctgtg
gcccaaggagttgggaataaaccacttgatgaagaacaaccaatttatgttccaccagaa
tttgtgcattgttgtcccaataattctagtggagtgtatcattgctacctgattgaatta
aagcagaacttcaattatgatatatcagttcataacatcgtgctagccatgagaaccgag
cttgagttcgaagtgcaaagcatgtgtcatgacatggacgttgacagaggaagcttggat
gttaattttaaatatataggcattattaagcttagcccagagcaggttcttttatgcaga
aggttccaagctacaattttcagagtcttgttgaagcataaatgggatatcgagttgagt
aaaaatgacgagatttgcttgggagatagtcctacggtcgattatcttctgctcccttca
actggtgtaggactgattagctgggagaccgttctgtctgtattagattcatccataaaa
tattgtgtacatcgtggtatttcctcattcaagggctttgcttacgacgttcaaacccaa
aacggacttgattgcatttgcagactcgagaattctatcgtgtatactcctcataacggt
tatgtatattgcataatgggtgctttgagtgcactcgatggaaactcattactcaagctc
cgaaaaaacgaaacgatgctgtcttacaaggagtattataaaatgaatcacggcattgac
ttacagtatgagaaacaaccattacttcgtgggaaaaaaatatttacagtgcataatcac
cttaagaaatgtagaaaacgcgaggagggagtatcaagtaattcgctagttgagctacct
cctgaactttgttctataataatgtctcccatatccatcaacaccatatattcgtattca
tttcttccttctattatgcatcgactcgaatcgatgctcattgccagcaacttgaaaaag
ttgaattcggatcattgcatgcaaaatgacattccaaccgtgaaggtcttggaagcaata
acaacaaaaagctgccaagagaaatttcatctagaatccctcgagactcttggcgattcg
tttcttaaatacgcgactggtcaacatctttttaaagcttttcagaaagatcatgagggc
cttcttagtctaaagaaagatagaatagtttgtaatgctgctctctgtaagcttggatgt
gaacacaaaatttcgggctttattcgagacgaggctttcgatcctcaaaagtgggcgatt
cctggtgatacacttgaggttcaccaattaacagaggaagtgctttctaatggaagaaaa
gtttatgttcgaagaaaaagaaaggtaaaaggtaagaggatagctgacgttgttgaggcg
ctaatcggtgcatatcttagcactggtggggaaagggcagcgattcagtttctaaatcgg
atcggtatagaagtgtattttgatattgtaccttacgagagaccttttagcgtcgatgct
cacaagctcattaatgttagacatttagagtccctgctgaattacacattcaatgatccc
tcattgttgttagaagcaatgactcatggttcatatatgcttccagaaattccaagatgt
tatcagcgactggaatttcttggagactcggtattagattacgtcgttaccgtgcatttg
tacaacaaatatcccggaatgtcaccgggattgttgactgacatgaggtcggcgtccgtg
agcaacgattgttatgcacgaactgcagtaaaggctcagctgtacaaaagtatactacat
ttgtctcatgacctccacaggcatattagttcgactcttagaaacttcgagatgtcgtct
tctgaagcaacgtacggatgggaatctgagacttctttacccaaggtttttggagatgtg
atcgagtctttagctggagcaatatacgtagactcgggatacaataaagataaggtgttc
gagagtatacgtccacttttagaaccgttaatatcgcccgaaacggtgaagatgcatcca
agaagagagttaaatgaggtatgccaaaagatgaactacaacttaaaaaaaactgttact
tctcgtgtgaatggaaaaacacacgttacagttgaggttgaagccaatgggaggatattc
aaacatacagcaatctctttggataaggagactggaaagaaggttgcttccaaagaagtt
ctcaaatctctaaaggactcctatggtcctttcctatag
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