Cucurbita moschata (crookneck pumpkin): 111461648
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Entry
111461648 CDS
T05248
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111461648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111461648
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111461648
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_14
TPR_1
TPR_8
ARM_TT21_N
ARM_TT21
TPR_19
TPR_12
TPR_11
DUF627
Motif
Other DBs
NCBI-GeneID:
111461648
NCBI-ProteinID:
XP_022961016
UniProt:
A0A6J1H971
LinkDB
All DBs
Position
Unknown
AA seq
847 aa
AA seq
DB search
MDARDSSSSAAEDDGALSVTAALAKDAASLFQSGKYAGCVEVLNQLLQKKEDDPKVLHNI
AIAEYLRDGCSNPKKLLEVLNNVKKRTENLAVSSGEQADAFNPENKSTSGKGNNVSAHQT
ATNNANIVYMDEFDASIPTLNIAIVWFNLHEYSKALAVLVPLYQNIEPIDETTALHICFL
LLDVGLACRDASLSADVLLYLEKAFGVTSISQSENGSTGVQQSTNVVAKSSSVPTNTSAF
ESSNSDLAASVNASENSLSRTLSDETFEYESMLSTLDIGGQNPATQTGFSSSNVLLRIPA
DRSLSTVDFKLKLQLYKVRFLLLTRNLKQAKREAKHAMNIARGIDSSMALLLKAELEYAR
GNHRKAMKLLLASSNRTDMGISSMLNNNLGCIYNQLGKYHTSTVFFSKAVSNSSALWKDR
KQTTFSQDNSLLIVYNCGVQYLACGKPFLAARCFQKASLIFYNRPLLWLRLAECCLMASE
KGLLKNNNLADSDRSDIKVHVVGTGRWRQLVLEDKTSKNGCAYSSGREDEHFSIEGQPKL
SITLARQCLSNALYLLNRSETSFSHSVLASNSTLEERDHPTEVAASRRYYKNLHCIDSKA
SAATLGSSQMNANGDTKEQKGATIQELVQNSLSYYEDISRRENVLIKQTLLADLAYVELK
LGNPLRALTIARSLMELPGCYKVYTFLGHVYAAEALCLLNRPKEATEYLLYYLSGGTDFK
LPFGQENFELFRIDGVADIEGVNGGSTTAANTSSREELHGFKFLRPEEARGVLFANFATV
LALQGDLEQAQQFISEALSIIPNSPEATLTAVYIDLAIGKSQEAFAKLKQCSCVRFLPSG
LTMRRSS
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggacgctcgtgattcatcttcgtcggccgctgaggacgatggagctctatccgtcact
gccgctcttgcaaaggatgctgcatcgcttttccaatcgggcaagtatgctgggtgtgta
gaggttttgaatcagctgttgcagaagaaagaagacgatcctaaggtgcttcataatatc
gccattgccgaatacttgagagatggttgttccaatccgaagaagttgcttgaagtatta
aacaatgtcaagaagagaaccgagaacctcgcagtttcatctggagaacaagcagatgct
tttaaccctgaaaataagagtacttcgggtaaaggaaataatgtatctgctcatcagact
gctaccaacaatgctaatatcgtatacatggatgagtttgatgcctccattcctacccta
aacattgctatcgtatggttcaatcttcatgaatattcaaaggcattagcagttcttgta
cctttatatcaaaatattgaacccattgatgagacaacggctcttcatatctgcttttta
ttgctggatgttggattagcctgccgcgatgcatcattatctgcagatgttctactttat
ctggaaaaagcctttggggttactagtataagccaaagtgaaaatggaagtacaggggta
caacaatccacaaacgtggtggcaaaatcttcgtctgttcctaccaatacttctgccttt
gaatcttccaattcagatttagctgcaagtgtcaatgcctcggaaaattctctatcgaga
actttgtcagatgagacatttgagtacgagtccatgttatcgacgttggatattggtggg
caaaatccagcaacacagactggtttttcatcttcaaatgttcttttaaggatcccagct
gatcggtctctatctacggttgatttcaagcttaaattgcaactatataaggttcgcttt
cttcttctcactagaaatttaaagcaagcaaagcgtgaagcaaagcacgccatgaacatt
gctcgtgggatagattcatctatggctcttctcctaaaggctgaacttgaatacgcccgt
ggcaaccatcgtaaggccatgaagctacttctggcatcgagtaaccgaacagacatgggg
atttcaagcatgctaaacaacaaccttggctgcatatataatcaacttgggaagtatcat
acatcaacagtattcttttccaaagctgtgtctaatagttcagctctctggaaggataga
aaacagacaactttttcacaagacaactctcttcttatcgtctataattgtggtgttcag
tacttggcttgtgggaaaccattccttgctgctcgatgctttcaaaaagccagtttgatt
ttctataaccgccctctgttgtggctccgacttgccgaatgctgcttaatggcttcagag
aaggggcttctgaagaacaacaaccttgctgattccgatagatcggatatcaaggttcac
gttgttggaacgggaagatggaggcagctcgtattggaagataaaacttcgaagaatgga
tgtgcatattcctctggtagagaagacgagcatttcagcatcgaaggacaacctaagctg
tcgattactcttgctcggcaatgtctctctaatgccctgtacttgttaaaccgttccgag
accagcttttcgcattctgtattggcctctaattctaccttggaggagagagatcatcca
actgaagtggcagcttccaggagatattataagaacttgcattgtattgattccaaggcc
tccgccgcaactctaggctcaagtcagatgaatgcaaatggtgatacaaaagaacaaaaa
ggtgctacaattcaggaacttgtgcaaaactccctctcctattatgaggatatttctcgg
agagaaaacgtgttgattaagcaaacacttcttgccgacctggcttatgtggagttgaaa
ctggggaacccgttgagagccctaacaattgcaagatctcttatggagcttccaggatgt
tataaagtttatacattcttaggccatgtttatgctgcagaggccctttgcttactaaat
agaccaaaagaagctaccgagtatttattgtactatttatctggaggaactgatttcaaa
ctgccattcggtcaggagaacttcgagctatttcgaatcgacggggttgctgatatcgaa
ggggtaaatggaggttcgacaacggcggctaatacttcatcccgggaggaacttcatggt
ttcaagttcctcagaccagaggaagcacggggagtcctctttgcaaattttgccactgtt
ttggccttacaaggagatcttgaacaggcccaacagtttatctcggaagcgctatcgatc
ataccgaacagtccagaagccactttgactgcagtttatatcgatcttgctatcggtaag
tcgcaagaagcttttgccaaattgaaacagtgtagttgtgtaaggttcctccccagcgga
ttgacaatgagaagatcttcgtga
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