Cucurbita moschata (crookneck pumpkin): 111462573
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Entry
111462573 CDS
T05248
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03013
Nucleocytoplasmic transport
cmos03015
mRNA surveillance pathway
cmos03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111462573
09122 Translation
03013 Nucleocytoplasmic transport
111462573
03015 mRNA surveillance pathway
111462573
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111462573
03041 Spliceosome [BR:
cmos03041
]
111462573
Enzymes [BR:
cmos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111462573
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111462573
Spliceosome [BR:
cmos03041
]
Complex C
Other components
EJC/TREX
111462573
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111462573
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
111462573
NCBI-ProteinID:
XP_022961952
UniProt:
A0A6J1HBG9
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVL
CHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILAL
SRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacaagagacaacgaatatgaggaagagctcctcgactacgaggaagaggaa
gagaaggcccccgattccgttggagctaaagtcaacggtgaagctggaaagaagggttat
gttggaattcatagttcgggattcagagacttcctattgaagccagagcttctccgtgct
attgtagactctgggtttgagcatccatctgaagtgcaacacgaatgtattccccaagct
attctcggcatggatgttatttgtcaagctaaatctggtatgggcaaaactgctgttttt
gttctgtcaacactgcagcagattgaccctgttgctggtcaagtttctgcactagttctg
tgccatacgagggagcttgcataccagatctgtcatgaatttgagaggttcagcacttat
cttcccgatctaaaggttgctgtcttctatggtggggtgaatattaaaattcacaaagat
cttctgaaaaatgaatgtcctcatattgttgttggaacacctggaaggatactggcattg
tcaagagacaaggacctatctctgaagaacgtccgacattttatcttggatgagtgtgac
aagatgcttgagtcccttgatatgcggagagacgtacaggaaatcttcaagatgactcct
catgacaaacaagttatgatgttctctgcaacactcagcaaagaaatccgcccagtttgc
aagaagtttatgcaagacccaatggaaatatacgtagatgacgaggcaaagctgaccttg
catggtcttgtccagcattacatcaaattgagcgagatggagaaaaatcggaagctgaac
gacctccttgatgcgttggacttcaatcaagtggttatttttgttaaaagtgttagtaga
gcagctgagctggataagttgttggtggagtgtaattttccctctatatgcatccactct
ggcatgtctcaagaagagaggttgactcgatacaagggctttaaagaaggacataagcgg
attcttgtggcaacagatttggttggtcgaggaattgacattgaacgtgtaaacattgtc
atcaattatgacatgccagattctgctgatacttatttgcacagggtcggcagagctggt
agatttggcaccaaagggcttgccattacttttgtatcatctgcagctgattctgatgtt
ctcaataatgttcaagaaaggttcgaagtcgatattaaggagcttccagagcagattgat
acatccacatacatgccatcatag
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