KEGG   Cucurbita moschata (crookneck pumpkin): 111463116
Entry
111463116         CDS       T05248                                 
Name
(RefSeq) lissencephaly-1 homolog
  KO
K20241  WD repeat-containing protein 44
Organism
cmos  Cucurbita moschata (crookneck pumpkin)
Brite
KEGG Orthology (KO) [BR:cmos00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cmos04131]
    111463116
Membrane trafficking [BR:cmos04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    111463116
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd EIF3I WDR55 WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_WDR35_TULP_N WDR90_beta-prop_4th NBCH_WD40 Beta-prop_TEP1_C Beta-prop_IFT140_1st Beta-prop_IFT122_1st Beta-prop_DCAF12 Beta-prop_Vps41 Beta-prop_HPS5 WD40_RFWD3 Ge1_WD40 WD40_like Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_SCAP RMC1_N Beta-prop_IP5PC_F Beta-prop_NWD2_C
Other DBs
NCBI-GeneID: 111463116
NCBI-ProteinID: XP_022962704
UniProt: A0A6J1HDZ0
LinkDB
Position
Unknown
AA seq 645 aa
MLSSDRDTDVFFDSEDYLPLEDSLVAEEVGSNKLGYEIWMSEPQSIKRRRQRFLQEVGLL
EFASSRTCAHDLVIESSDSSGRMELERLTEFSGAVSSSDYAPTCNVEENDLELCSNEMLL
PVSVSNSGSRRCHGEADVEGCRDIDVGKRKIKKWWRSFKNKAASLRSTEFSEELKTIPAK
SKTCRMKVYQNKKRCSEFSALYMRQQIVAHKGLIWTMKFSPDGKYLASGGEDGVVRVWRI
SSANASTEFLANDGNYNNKPREGKSSFSSKPLRFATVVIPEKVFQIDEQPVQEFYGHSSD
VLDIAWSNSNCLLSSSKDKTVRLWGVGSDQCLGVFHHKNYVTCIQFNPMDENYFISGSID
GKIRVWSVLKQRVVDWADVRDVITALAYQPDGKGFAIGSITGTCRFYKTSGDYFHLDAQI
NVQGRKKASGKRITGIQFCRENSQRVMITSEDSKVRIFEGTEIVNKYKGLPKSGSQMSAS
FTKNGKHIISVGEDSRVYMWNYDSLHLSSMKETKSQQSCEHFLSDGASVAIPWPGLGTEL
KCFGNNQRQFSQRQDNQGASERFSLANWFSADNLCRGSTTWPEERLPLWDLPVADDEHGN
LEHHNSQSDAHDHVAPPDTWGLVIVVAGLDGTIKTFHNYGLPIRL
NT seq 1938 nt   +upstreamnt  +downstreamnt
atgctgagttctgacagagacacagatgttttcttcgactcagaagattacttgccatta
gaggactccttggtagcagaagaagtgggttccaacaagttgggatatgaaatatggatg
agtgagccacagagcattaagaggagaagacagcgttttcttcaagaagttggattactt
gaatttgcgtcttcaagaacttgtgcacatgatttagtgattgaatcaagcgattcatca
gggaggatggaattggagagacttacagaattcagtggagctgtctcaagttctgactat
gctcctacctgtaatgtggaggagaatgatttagaactatgctcaaatgagatgcttcta
ccagtttctgtttcgaactccggttctcgacgttgccatggcgaagctgatgtcgaaggt
tgccgggatattgatgtcggtaaaaggaaaataaagaagtggtggagatcattcaagaac
aaggcggcgagcttaagaagtacagagttttctgaggaattgaaaacaatcccagcaaaa
tccaaaacttgcagaatgaaggtgtatcaaaacaagaagagatgctcagagtttagtgct
ttgtatatgagacagcagattgttgcacacaagggcttgatttggacaatgaagtttagt
ccagatgggaagtatttggcaagcggaggagaagacggagtcgtacgcgtatggcgtata
tcgtctgcaaatgcatctactgaattcttagcaaatgatggtaattataataacaaacca
agagaagggaagtctagcttcagcagcaaaccgttgagatttgccactgttgtcattcct
gaaaaggtttttcagattgatgagcagccagtgcaagagttctatgggcattccagtgat
gtcttggacatagcttggtccaattcaaactgtcttctttcatcatcaaaggataaaact
gtgcgcttgtggggagttggctctgatcaatgtcttggtgttttccaccacaagaactat
gtgacttgtatccaattcaatccaatggatgaaaactacttcatcagtggctcaattgat
ggcaaaatccgagtttggagtgtgttgaaacagcgggtggttgattgggctgatgtccga
gatgtcattactgctttagcttatcaaccagatgggaagggttttgctattggctcgatt
accggcacgtgtcgtttctacaaaacatcaggtgattattttcatttggatgcacagatc
aatgttcaagggcgaaaaaaggcctcgggcaaaaggatcactggcattcagttttgccgg
gaaaactctcaaagagtgatgataacttcggaagactcgaaagtacgcatattcgaagga
accgaaatcgtcaacaaatataaaggtctaccgaagtcggggagtcagatgtctgcttct
tttacaaaaaatgggaagcatataatatctgtaggagaggactctcgtgtatatatgtgg
aactatgatagtcttcacctctcatcaatgaaagagacgaaatctcagcagtcttgtgag
catttcttgtctgatggtgcttctgttgctataccatggcctggtcttggaacagagctg
aaatgctttggcaacaaccaacggcagttctcacagagacaggataaccaaggggcttca
gagcgtttttcccttgctaattggttctctgctgataatctgtgccgtggatccacaaca
tggccagaagagaggctacctctctgggatttaccagttgcagatgatgaacatggcaac
ctggaacaccataatagtcagagcgacgcccacgaccatgtagctccacccgacacatgg
ggccttgtgattgtcgttgctggattagatggaactataaagacattccataactatgga
ttgcccatcaggctttag

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