Cucurbita moschata (crookneck pumpkin): 111463367
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Entry
111463367 CDS
T05248
Name
(RefSeq) uncharacterized protein LOC111463367 isoform X1
KO
K19026
spatacsin
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
111463367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmos03400
]
111463367
DNA repair and recombination proteins [BR:
cmos03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
111463367
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
111463367
NCBI-ProteinID:
XP_022963046
UniProt:
A0A6J1HEZ7
LinkDB
All DBs
Position
Unknown
AA seq
3219 aa
AA seq
DB search
MDSVSGCEGPAILQLQNWNPSQPQLNLSEYREAFISPTRSILLLHSYKHEALLLPLDTGG
NRCSDDFPNKYDIDLKDLGSSAFSEEASTTSWREDAEGDVQCSNRLAVDVDKDSPTKNRF
SRSSCNNFLGDVSSLAWGLCGDSYTKQEDSSFKEILFVSGNHGVTAHAFYQPKKFVVEGK
NMVQSEFWKGRWVEWGPSPRLPQNLEIEECSGFCETSGNVDENGTNQNGEMLRSSCSESE
NDALLSGNSASKRYLQSFLAKVKTVEFEDNIWTMYPEKTSVPCFTKVVSFNIFNYNLPPP
NSDDSFVNEQSWHEIILGTRSNMSPTSFDTHFLGIGMNKSYKCSKIFSSDSHFLIGFVLK
RMDTVSVEEGAETESRNGTLILVARVGNLGIKWVSSVKFEKSLYITPVMEWADFCFSNDF
IVCLSDSGFIFLHSALSGKHVACVDVLQACGLNPQYLHEKQDLQRNLVDQVQDDLSYRRS
FHERKFRRLLSDSHSSHFAVIDASGVIYVVSAIEHMLEHCHGYENLFPHSHDFELGRSLV
SWEVGGYDIGCQRNYSCRDFSKQSEGGSHWGNTKSNVLQNIKDSKVYRGRGDKCSCLTAT
ASLLKEQKSEGGELQSGTMRKMFLSTWKTNEDDCFGFSPMGLTQYIKRCNMSGQNISQVV
HFDLHLKSEVHDDSCLKSQMIFVDGRKKDIVGEAVGCTSQGSLYLVTNNGLSVVLPSVTI
PSNSLPSEYVSRSQPDIILGTANQVKDLELKESKCPWSPWQVEVLDRVLLYESIDEADRL
CSENGWDLKVVRMRCFQMALHYLRFDELERSLEMLVDVDLEEEGILRLLFAAVHLMFQKA
GNDNDISAASRLLALGTHFATRMIHRYGMAEFKRNATTFNDFSSGQEISILPHLPFQKQN
VSEHSRKLHEMSHFLEIIRNLHGHLSSKFKRPSQELVVGEESDQTSLLLDEPQLVSTDII
PLGSTSQYELSFPSNDLNSNVVDGLAIMPMVSGSQFNSEDLDEDSAVVPQGVLEKKVVPL
ENPNQMIARWKSDKLPLKNVVKDALLSGRLPLAVLQLHINHLRELIEENEPHDTFSEIRD
IGRAIAYDLFLKGETGLAIATLQRLGDDIEVSLKQLLYGTINRSFRVEIAAEMKKYGYLG
PFDQRMMDRILHIERLYPSSNFWKTFLSRQKANMGFPSSSNSPGENELRTLRFHLINNTF
IDCGEVDGVVLGSWPNANESSSVVETTEDNAHIGYWAAAAIWTNTWDQRTTDRILLDQSL
GNGIHVAWESQLDYHICHNNWDGVSRLLDMIPDANILDGSLQVSLDGLQSASAVGCNRES
TFYSNYLYPLEELDAVCLYIPNVKIFKFSANIMCSKLLGMLLEEKLARHFIFLKEYWEGS
MELVPLLARSGFIIHRLDEIASMDDHISSSVDQRSSNKGGAYSVDSVQALYKVFIHHCSQ
YNLPFLLDLYLDHQKLVIDNNSVHSLLEAAGDCHWARWLLLSRIRGCEYDASFSNARSIM
PLNLVHDPNLSVRNIEEIISTVADIAEGGGEMAALATLMYAPSPIQDCLNSSGVNRHSSS
SAQCTLENLRPVLQRFPTLCRALVTSAFQQDTTCNFLGPKWKNALSEYLHWRNSTIFSAG
RDTSLLHMLPCWFPNAVRRLLHLYVQGPLGWQSISGLPTGQALWERDVYFFMNDDEHSEI
SPISWEAAIQKHIEDELYDSSLKETGLGLEHNLHRGRALSAFNHLLVARVQKLKSEIQSG
SAIGQSNIQLDLQTLFAPLTPTEQSLLSSVIPLAITHFENSVLVASCAFLLELGGLSASM
LRVDVAALRRISTFYKSGQSFENFRQLSPKGSAFHPVPLESDKIETLARALADEYLHQES
SSVNEPTGTSDSAPPKRCSQVLLFVLQHLEEVSLPHMVDGNSCGSWLLCGKGDGTELRNQ
QKAASHHWNLVRVFCRMHRIPLSSKYLALLARDNDWVGFLTEAHVGGYPFDTVIQVASRE
FSDPRLKIHILTVLKSVQSRKSPGTSSYSDTEEKKGQTTILDGSMYIPVELFTILAECEK
KKNPGKALLIKAEELSWSILAMIASCFPDVSPLSCLTVWLEITAARETTSIKVNDIASQI
AENVGAAVEATNTLPAGCRSSAFHYCRKNPKRRRTMDSVSDDPSVIAISDNFSASRASTN
VPGDSIVKEEGKIVQEPQRISVSYDSDEAPSSLSKMVSVLCEQKLFLPLLRAFEMFLPSC
SLLPFIRALQAFSQMCLAEASAHLGSFSARVKDEAIYSHANVEGEENTGTSWTGSTAVKA
ANAVLSVCPSPYERRCLLKLLAATDFGDGGFSASYYRRLYYKINLAEPLLRIDDALHLGN
EALDDASLLSALENNRHWEQARNWAKQLEASGGSWKSASHHVTETQAESMVAEWKEFLWD
VQEERVALWGHCQALFIRYSFPALQAGLFFLKHAEAVEKDLPAKELHELLLLSLQWLSGM
FTVSYPVYPLNLLREIETKVWLLAVESEAELKNERDLNISGSIRECKSRNSSSIIDLTAS
MISKMDKHISTMTNKNMDKHEVRENSQTHHKSQVLDAGLSTAGGGNTKAKRRTKGSMLLR
RPLADSADMNTNSEDGYISSNFKNDLHMQDENLKMDTSFSGWEERIGPAEVERAILSLLE
FGQITAAKQLQQKLSPEQVPSEFLLVDASFKLAAISTSNCEVPMSMLDGDLCSVILSSGI
QVDQYLNPLQVLETLATVFAEGGGRGLCRRVIAVVKAANVLGLPFSEAYNKQPIELLQLL
SLKAQESFEEANFLVQTHSMPAASIAQILAESFLKGLLAAHRGGYMDSQKDEGPAPLLWR
FSDFLKWSELCPSEPEIGHALMRLVITGQEIPHACEVELLILSHHFYKSSACLDGVDVLV
ALAATRVEAYVAEGDFPCLARLITGVGNFYALSFILGILIENNQLEFLLQKFSAAISTST
GSAEAVRGFRIAVLTSLKHLIPNDLDAFAKVYSHFDMKHETAALLETQAEQSCEMWFRRY
DKDQNEDLLDAMLYYIKAAEVYSSIDAGNKTRRSCAQASLVSLQIRMPDFKWLFQTETNA
RRALVDQSRFQEALIVAEAYDLDQPSEWALVIWNQMLKPDILEDFVAEFVTVLPLHPSML
GDIARFYRSEVAARGDQSQFSVWLTGGGLPAEWAKYLGRSFRCLLKRTRDLRLRLQLAQL
ATGFMDVINACTKALDKVPENAGPLVLRKGHGGTYLPLM
NT seq
9660 nt
NT seq
+upstream
nt +downstream
nt
atggactcggtttcaggttgtgagggtcctgccattctgcagctgcagaattggaatcct
tcacagcctcaacttaacctctcagagtatcgcgaagcttttatttctcctacaaggtca
attttgttattgcattcatacaaacatgaagcgttgcttcttcctctagatacagggggc
aataggtgtagtgatgacttcccaaataaatatgatatcgacttaaaagatttgggatca
tcagctttctcagaagaagcatcaacaacatcttggcgagaagatgctgaaggtgatgta
caatgctctaatagattggctgtcgacgttgataaggattctcctaccaaaaacagattt
tcaaggtcgagttgtaacaacttccttggtgatgtaagttcacttgcttgggggctttgt
ggagattcctatacgaagcaagaagattcttcttttaaggaaattttatttgtatctgga
aatcatggtgtcactgctcatgccttttaccagccgaagaaatttgttgtggaaggtaaa
aatatggtgcaatctgaattttggaaaggaaggtgggtggaatggggaccttccccaaga
ttacctcaaaatttggagattgaagaatgttctggtttttgtgaaacctctggaaatgtt
gacgaaaatgggacgaatcagaatggggaaatgttacgcagttcttgctctgagagtgag
aatgatgccctgttgtcaggaaatagcgcatctaagagatatttacaatcatttcttgct
aaagttaagactgttgaatttgaagataacatttggacaatgtacccggaaaaaacgtca
gttccttgctttacaaaggtggtttcatttaatatatttaattataacctgccgccacca
aattctgatgattctttcgtcaatgaacagagttggcatgaaataatccttggaacacgc
agtaatatgagtccaacttcatttgacacccattttctaggcattggcatgaataaatca
tacaaatgttccaaaatattttcaagtgattcacattttttaattggatttgttttgaag
agaatggatactgtatctgttgaagagggtgctgaaactgaaagcagaaatggtacttta
attcttgttgctagagttggaaatttgggaattaagtgggtgtcttctgtaaaatttgag
aaaagcctatatattacaccggtgatggagtgggcagatttttgcttttcaaatgatttt
atcgtttgtttaagtgactctggttttatcttcctacactctgctttgtctggcaagcat
gttgcatgtgttgatgttttacaggcgtgtggactcaatcctcagtacttgcatgagaaa
caagatttgcaaaggaatctagtagatcaagtccaagatgatttatcttatagacgtagt
tttcatgaaagaaagtttagaaggttattatctgattctcattcctcacattttgctgtg
attgatgcatctggtgtaatatatgttgtttctgctattgaacatatgttagagcattgc
catggatatgaaaatctgtttccacattctcatgatttcgaacttgggaggtctctagtt
agttgggaggttggtggttatgatataggctgtcagaggaactattcatgtagggatttt
tccaagcaaagtgaaggtggttcacattggggtaatactaaatctaatgtgcttcaaaat
attaaggactcaaaggtttatagggggagaggagataagtgctcttgtttaactgctact
gcttcccttttgaaagagcagaagtccgagggtggagaattacaatctggcaccatgcga
aagatgtttctttccacttggaaaactaatgaagatgattgttttggcttctctcctatg
ggacttacgcaatacattaaaagatgtaacatgagtggccagaatatctctcaagttgtc
cattttgatttgcatctgaagtctgaagtccatgatgatagctgcttgaaatcccaaatg
atttttgttgatggaaggaaaaaagatattgttggagaagcagttggttgcacttcacaa
ggatctctttatttggtgacaaataatggtctttctgtggttttgccttctgttaccatt
ccgtcaaattctttaccttccgagtatgtctctaggtcgcaacctgatattattcttggc
actgctaatcaagtaaaagatttggagcttaaagaatccaagtgtccatggtcaccctgg
caagttgaagttttggacagggtcctcctatatgaaagcatagatgaggcagatcgctta
tgttctgagaatgggtgggacttgaaagttgtgcggatgcgttgctttcaaatggcattg
cattatttgagatttgatgaactagagcgatctctagaaatgcttgtggatgttgatttg
gaagaagaaggaattttgagattactctttgctgccgtacatctgatgtttcaaaaagct
ggtaatgataatgatatctcagccgcttcaaggcttcttgcacttgggacacactttgcg
accagaatgattcatcgatatgggatggctgagttcaagagaaatgctactacttttaat
gactttagtagcggccaagaaatttccattctcccgcatcttccttttcaaaagcaaaat
gtatcggagcattcaagaaaacttcatgagatgtctcactttttggagataataagaaat
ctgcacggccatcttagttcgaaattcaagaggccaagtcaggaattggtcgtgggggag
gaatctgaccaaaccagtctattgctggatgaaccacagcttgtttctacagatataata
ccattggggagtacaagtcaatatgaactgtcatttccttcaaatgatttgaactctaac
gttgtagatggtcttgctatcatgcccatggtttccggatcccagttcaattcagaagat
ttagatgaagactcggctgttgtaccacaaggagtcctggaaaagaaagttgttcccttg
gagaatcctaaccagatgattgcacgttggaagtcagataagttgccacttaaaaatgtg
gttaaagatgctcttctctctggccgtcttcctttggctgttcttcaactacacataaat
catttgagagaattaattgaagagaacgaacctcatgatacattttctgaaattcgtgac
attggaagagctattgcttatgatctcttcttaaagggtgagactgggcttgccattgct
acgctgcagaggcttggagatgacattgaagttagcctcaagcaattgttgtatggtaca
attaacagatcttttcgagtagaaattgctgcggagatgaaaaaatatggttatctgggg
ccatttgaccagaggatgatggatagaatattacatattgagaggctctacccaagcagt
aatttctggaaaacatttctgagcaggcagaaagcaaatatgggattcccatcaagttct
aacagcccaggagaaaatgaattgaggacattacgtttccatttaatcaacaatactttc
attgattgtggtgaggttgatggtgtggttttaggttcgtggcccaatgccaatgagagc
tcttctgtcgtggagaccactgaagataatgctcatataggatattgggctgccgctgcc
atttggacaaacacgtgggatcagcgaacaactgatcgtatattactggatcaatctttg
ggtaatggtatccatgtagcatgggaatctcaacttgattaccatatatgccataataac
tgggatggagtatcaagacttctcgatatgattcctgatgctaatattttggatgggagc
ctccaagtaagcttagatggtctacagtcagcttcagcagttgggtgcaacagagagtct
actttttacagcaattacttgtatcctctagaagagttagatgctgtttgcttgtacatt
cccaacgtcaaaattttcaaattttcagctaatattatgtgctccaaattgttgggtatg
ctcttggaggagaagcttgcaaggcattttatatttctgaaggaatattgggaaggctca
atggagctggtacctcttcttgcccgttctggcttcattatacacagacttgatgagatt
gcttctatggatgaccacatcagcagttcagttgatcaaagatcttcaaacaagggcggg
gcatattctgttgattctgtgcaagcattgtataaagttttcatacatcactgttcacag
tataacttgccttttcttctcgacctttatctggaccatcagaaactggttattgataat
aattcagttcattcactactggaagctgctggagattgtcattgggcaagatggctactt
ctgtcgaggatcaggggctgcgaatatgatgcatcattttctaatgctcgctcaataatg
ccactgaatttagttcatgatcccaacctcagtgttcggaatattgaagagattatttcc
actgttgctgacattgctgaaggtgggggagaaatggcagccttagcaactctaatgtat
gctccgtccccaatccaagattgtttaaatagcagtggtgtaaacagacatagtagctcg
tcagcccaatgtactcttgaaaacctcaggccagtcctgcaacgattccctacattgtgc
cgtgccctagttacatcggctttccagcaagatacaacttgcaattttttgggtccaaaa
tggaagaatgcgttatctgaatatctacattggcgtaacagcaccattttttctgctgga
cgtgatacttcacttttacatatgctaccatgctggtttcccaatgcagttcggagattg
cttcatctctatgtccagggtcctcttggatggcaatcaatttcaggtttgccaacgggg
caagcattatgggagagggatgtatatttttttatgaatgatgatgaacattctgaaatc
agtccaatctcttgggaagcagccatacagaagcacattgaagatgaactatatgattca
tctctcaaggaaactggacttgggcttgagcacaacttgcatcgtggacgtgcattatca
gcttttaatcatcttcttgttgctagagttcagaaattgaaatcagagattcagtcaggt
tcagcaattggacaatcaaatatacagttggatctacagacactttttgcgcctttgaca
ccaacggaacaatctcttctttcttcggttattccacttgccattacgcattttgagaac
tccgtgttagttgcctcatgtgcttttctcctggagctaggtggtttgtctgccagtatg
ctccgtgtagatgtagcagctttaagacgaatatcgacattttacaagtctgggcaatcc
tttgagaatttcaggcaactttcacctaagggttctgcttttcacccagtacccttggaa
tctgataaaatagagactcttgctcgagctctggctgatgagtatctgcaccaggaaagc
tcaagtgttaatgagccaacgggcacttctgattcagcacctccaaaacgttgttcacag
gtgcttttgtttgtcctacagcatttggaagaggttagtcttccccacatggtcgatgga
aattcatgtggatcgtggttattatgtggtaaaggtgatgggaccgagctaagaaatcag
caaaaagctgcaagccatcactggaatttagttagagtcttttgtcggatgcataggatt
cctctaagttcgaaatatcttgctttgttagcaagagacaatgactgggttggattttta
actgaggctcatgttggcgggtacccctttgacacagtaatccaagtagcatcaagagag
ttcagtgatccacgtctcaaaatccatatattaacggtattgaagtctgtacagtcgagg
aaaagccctggcacttcatcatactccgacactgaagagaaaaaaggtcaaaccaccatt
ttagatggaagtatgtatattcctgttgagctctttaccattttagctgaatgtgagaaa
aagaagaaccccggaaaagctctcttgataaaggcagaagagttgtcctggtctattttg
gcaatgattgcttcttgcttcccagacgtctctccattatcctgtcttactgtttggcta
gaaattacagcagcaagggaaactacatccattaaggtaaatgatattgcttcccagata
gcagaaaatgtcggggcagcagtagaagctaccaataccttgccagctgggtgtagatca
tctgcatttcattactgccggaaaaatcccaaacgaaggcgaaccatggattccgtttct
gatgatccatcagttatagcgatatctgataatttcagtgcttcacgtgcatcaactaat
gttccaggtgactctattgtcaaggaagaaggaaagatagttcaggaaccccaacggatt
tctgtttcatatgattcagatgaagcaccatcatctctgtccaagatggtttctgtgctt
tgtgaacagaaactattcttgcctctgttgagggcttttgagatgttccttccttcatgt
tccctgctaccattcatccgtgcacttcaggcattttcacaaatgtgtttagctgaagct
tcagcacatttaggttcattttctgcacgagttaaggatgaagcaatctattctcatgca
aatgttgagggagaagaaaatactgggacgtcatggactgggtcgactgctgtcaaggct
gccaatgcggtactgtctgtttgtccatctccatatgaaagaagatgcctactgaaactt
ctagctgcaactgattttggtgatgggggattttctgcctcatattatcgacgactttat
tataaaatcaatttagctgagcctttactacgtatagatgatgcgctgcaccttgggaat
gaggcgctagatgatgcatcacttttatcagcgctagaaaataatagacattgggagcaa
gcacgcaattgggcaaagcaactggaagctagtgggggttcttggaaatcagctagtcat
catgtcacggaaactcaggctgaatctatggtagcagagtggaaggagttcttatgggat
gttcaagaagagcgagttgcattgtggggtcactgccaggcactcttcatcagatattcc
tttcctgctttacaggctggattgtttttcctcaaacatgcagaagctgtggagaaagat
cttccagccaaggagcttcatgaactattattactttccttgcaatggttaagcgggatg
tttaccgtgtcctatccggtttatccattgaatcttctacgagaaattgagaccaaggtt
tggctgctggctgtagagtcagaagctgaactgaaaaatgaacgggacctgaacattagt
ggctccatccgggaatgtaaatctaggaatagctcaagtattatcgacttgactgcaagt
atgatatcaaaaatggataaacatataagtacaatgacgaataaaaatatggataaacat
gaggtcagagaaaacagccagactcaccataaaagtcaagtattagatgctggtctttca
actgcaggaggggggaatacaaaggcaaaaaggaggacaaaaggttccatgttactacga
cggccattagcagactctgcagacatgaacactaactctgaagatggatatatttcttcc
aattttaaaaatgacttgcacatgcaagatgagaacttaaaaatggatacatcattttca
gggtgggaagaaaggattgggcctgcagaggtggaaagagccattctttcattgctagag
tttggacaaattacggctgccaagcagcttcaacaaaagctatctcctgagcaagtgcct
tcagaattccttcttgtggatgcttcttttaagctcgcagctatatcaacctccaattgc
gaggttccaatgtccatgcttgatggggatttatgttcagttattctttcatctggtatt
caagttgatcagtatctcaacccattgcaggttttggagactttagcaacagtttttgct
gaaggtggtggacgtgggctttgtagaagagttattgcggtcgtaaaagcagcaaatgtc
ttgggacttccattttcagaggcatataacaaacagccaattgaactattacagctgctc
tctctcaaggcacaagagtcatttgaggaggcaaatttccttgtgcagactcactctatg
cctgctgctagtattgctcaaattcttgcagaatcttttctcaagggcttgctggctgca
catcgtggaggttatatggattcccagaaagatgaaggacctgctcctctactatggaga
ttctctgatttcttgaagtggtcagaactttgtccttctgaaccagagattgggcatgcc
ttgatgcgtttagttatcactggacaagagataccacatgcctgtgaggttgaactttta
attttgtctcaccacttctacaaatcatcagcttgcctcgatggggttgatgttctcgtg
gctcttgctgccacaagagttgaggcttatgtggctgagggtgattttccatgtttagct
cgtctgatcactggagtaggaaacttctacgcccttagttttattcttggcattcttatc
gagaacaatcaactagaatttcttcttcaaaagttttcggctgctataagtacaagcaca
gggagtgctgaggctgtcaggggctttcggatcgctgttcttacatcccttaagcattta
atccccaatgatcttgatgcatttgctaaggtttacagccattttgacatgaagcatgaa
acagcggcccttttggagacacaggcagagcagtcttgtgagatgtggttccgccgctat
gacaaggaccagaacgaagaccttttagatgccatgctatactacattaaagctgctgaa
gtttattcttccattgatgcaggcaacaaaactcgcagatcctgtgctcaggcctctcta
gtgtcccttcagattaggatgcccgactttaaatggctcttccagacagaaaccaatgcc
agaagagctctcgtcgaccaatcaagattccaggaggcactaattgttgctgaagcttat
gatctcgaccagccaagcgagtgggctttagtcatttggaatcagatgcttaagccagat
attttagaagactttgtggctgaatttgtcactgtgcttccactccatccttcaatgtta
ggcgacattgcaagattttataggtccgaagtcgctgcccgtggggaccagtcccagttc
tccgtctggctgactgggggagggctgcctgcagagtgggcaaaatatttgggaagatca
tttagatgcttgttgaaaaggactcgggatttgaggctccgtttgcaactagctcaactt
gccactggttttatggatgttatcaatgcttgcacaaaagcgcttgataaggtacctgag
aacgccggacctcttgttcttaggaaagggcatggcggtacatatcttccgctgatgtaa
DBGET
integrated database retrieval system
