Cucurbita moschata (crookneck pumpkin): 111463879
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Entry
111463879 CDS
T05248
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
111463879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111463879
04121 Ubiquitin system [BR:
cmos04121
]
111463879
03036 Chromosome and associated proteins [BR:
cmos03036
]
111463879
03400 DNA repair and recombination proteins [BR:
cmos03400
]
111463879
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
111463879
Ubiquitin system [BR:
cmos04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
111463879
Chromosome and associated proteins [BR:
cmos03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
111463879
DNA repair and recombination proteins [BR:
cmos03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
111463879
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_2
zf-HC5HC2H_2
zf-RING_2
Prok-RING_4
zf-C3HC4_4
zf-RING_5
zf-RING_6
PHD_NSD
RTT107_BRCT_5
PTCB-BRCT
zf-RING_10
DUF3573
Motif
Other DBs
NCBI-GeneID:
111463879
NCBI-ProteinID:
XP_022963583
UniProt:
A0A6J1HI78
LinkDB
All DBs
Position
Unknown
AA seq
685 aa
AA seq
DB search
MADFSSNVRANANTSRFLNPWVLHFQKMGLELKCPLCLSFFDEPVLLPCDHLFCKSCMPF
ASQIGSECPLCKAGFVDRDLRPAPFMDKMVSIYRSLDATFATNMSKLVSAVDVGATVEKS
RFVQSTPCAGPNCKEFQGCSMPADCKCENLDIESRKGSYRRHEDCRMPPVSQTDQLSAGS
PPPFGDGKVSDDSSDEYRGHGSKNDSDRRSVIANADDKKLQLSKCTSSVSEEEGHLRDPK
RQKLDYGQLKSGSSSVDQTHPPASELGNSETSNSEMEHKSQVTIASNLPLADAEDAIVRN
AKCAFCQSSKVTEDTGPVLHYLNGSLVVGVEAANPNVIHAHKLCVDWAPQAYYQGDDVHN
LKSEVARGSKLKCSKCGLKGAALGCYSKSCQKSYHVPCALEIEECRWDTDNFLLLCPSHS
SARFPDERSKSRKMPRNQASPFRMNQQDSNNWVSPPDGVKKWAFCGSALSAEERNILVKF
AKISGATVSKFWKPDVTHVIASTSENGACTRTYKVLMGILNGVWILNMDWVKACMKERRP
LNEEPYEIALDNYGCIDGPKSGRLRVLNNAPKLFTGLSFYFTSDFPPAYEEDLQDLVITA
GGTILENEELAVPSCSSDQAAAPKVLVVYNLDSPGGCKVGEEVSILWQRLNDAEGIAAKV
GAQVIGHTWLVESIAAGNLQPFVSC
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcggatttttcaagcaatgttcgtgctaatgctaatactagcagattcttgaaccct
tgggtgcttcatttccagaaaatgggacttgagcttaaatgtcctctctgcttgagcttc
tttgatgaaccagttctgcttccatgcgatcacctcttttgcaagagttgcatgccgttt
gcttcacagattggatcagagtgtcctttatgcaaagcaggatttgtcgaccgagacctg
aggcctgctcctttcatggacaagatggtgtcaatctacaggagtctggatgccacattt
gctactaatatgtccaaactagtctcagctgtagacgttggggcaactgtggagaaatca
cgttttgttcagtctaccccttgtgctggccccaactgcaaggagtttcagggatgtagc
atgcctgctgattgtaagtgtgaaaatctcgatattgagagtagaaagggtagttatagg
aggcatgaagattgtagaatgccgcctgtgagtcagacagaccagttatcagcaggaagc
ccacctccgtttggtgatggcaaggtgtcagatgacagtagtgatgagtaccgtggtcat
ggatctaaaaatgattcagacaggagatctgttatagctaatgccgatgataagaagctg
caattgtctaagtgtacgagttctgtttctgaagaggaaggtcacctgagggaccccaag
agacaaaagttggattatggccagttaaagtcaggctcaagcagtgttgatcaaacccat
cctccagcttcagagcttggaaattcagagacttcaaattctgaaatggaacacaaatct
caagttactattgctagcaatctgcctcttgctgatgcagaagatgccattgtgagaaat
gccaaatgtgcattttgtcagtcctctaaagttacagaggatactggacctgtcctgcat
tatttgaatggcagtttggtcgttggagttgaagcagcaaatccaaatgtcatacatgct
cacaagctttgcgttgattgggcaccacaggcatactatcaaggtgatgatgttcataat
ttgaagtccgaagtggcaaggggttcaaagctcaagtgtagtaaatgtgggctaaaagga
gcagccctgggttgttattcgaagtcttgccagaaaagctatcatgtaccttgtgcactt
gaaatagaggagtgccgttgggacacggataattttcttcttctgtgcccctcgcattca
tcagcaagatttccagatgaaaggtccaagtccaggaagatgccgagaaatcaggcttct
ccatttcgaatgaaccagcaagattcaaacaattgggtatctccaccagatggggtaaaa
aagtgggcgttttgtgggtcagctctgtctgctgaagaaaggaatattttggtcaagttt
gcaaaaatatctggtgccactgtgtccaaattttggaagccagacgtgactcatgttatt
gcatccacatctgagaatggtgcctgtactcggacatataaagtccttatgggcatattg
aatggagtatggattctgaatatggattgggtaaaagcttgcatgaaagaaaggcgtcct
ttgaacgaggaaccttatgaaattgctcttgacaactatgggtgtattgatggtcccaaa
tctggcaggctgagggttttaaacaatgcacccaaactcttcactggcttaagtttctat
tttactagcgactttccacctgcttacgaggaggatcttcaagatttggttataactgca
ggaggtaccatattggagaacgaagaattggcagtaccaagttgtagtagtgaccaggct
gctgcaccaaaggtgctagttgtttataatctcgactcccctggaggatgcaaagttggg
gaggaggtttcaattctctggcaaagattaaatgatgctgagggaatagctgctaaggtt
ggagcccaagtcattggtcatacatggcttgtggaatccattgcagcgggtaacttgcaa
ccttttgtcagctgctaa
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integrated database retrieval system
