Cucurbita moschata (crookneck pumpkin): 111464056
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Entry
111464056 CDS
T05248
Name
(RefSeq) exosome complex component RRP4 homolog isoform X1
KO
K03679
exosome complex component RRP4
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111464056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111464056
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
111464056
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
111464056
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
111464056
NCBI-ProteinID:
XP_022963877
UniProt:
A0A6J1HGD9
LinkDB
All DBs
Position
Unknown
AA seq
327 aa
AA seq
DB search
MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN
GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM
LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS
KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV
HEMLGSEFCVLTAEKEAERRTSSKKRG
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgagagaattacaaatttccttgaatcaaacccagaagattcggcttcaaagagcccta
gaattgctcgagtctatctcttcgaaggccaattccgatgcttctgttatagttgctgat
accattcctttgaattacgacgatggtgtcctcaagggacatgggacccttgacttaaat
ggagaagtagttgccactatttgtggagtggttgagcgagtcaataagcttatctatgta
cgtgccttacgtgctagatataaaccggaggttggtgatatcatagtggggcgtgttaca
gaggttgcccctaaacgttggagattgaacataaattatagccaagatgctgtcttgatg
ctttcttcaatgaacttgcctgatggtattcagaggaggcgaactgcagttgatgaactc
aacatgcggagcattttcgaagaaaatgatgttatttgtgcagaagtgcgtggttttcag
catgatggcctacaccttcaagcgagaagccagaagtatgggaagcttgaacgaggtcag
ctgctcacagtatcaccatatctagtcaagagacgcaaacaacacttccatcatttggag
cagtatggtattgacttaatattcggatgcaatggatttatctggattggggagcatgtt
gatcccacagaggatatgatgatagaagatcaagttaataaatctgaacaaaagggttca
aaatttgaaggaacttttggtaaccaagtgcaagaaagagtatatactccactagagaca
cgtcagaatatatgcagaactgcaaatgctattcgagtattgtccaacttaggtttcata
atgacagtagaagtcataatggagacagttagtctaagtttttctctgaacatcaatgtg
catgaaatgcttggttcggagttctgtgtcctcactgcagaaaaagaggctgaacggcgg
acttcgagtaagaagaggggatga
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