Cucurbita moschata (crookneck pumpkin): 111464093
Help
Entry
111464093 CDS
T05248
Name
(RefSeq) protein CHROMATIN REMODELING 8-like isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
111464093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cmos03036
]
111464093
03400 DNA repair and recombination proteins [BR:
cmos03400
]
111464093
Chromosome and associated proteins [BR:
cmos03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
111464093
DNA repair and recombination proteins [BR:
cmos03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
111464093
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
WHD_Rad26_CSB
HDA2-3
ResIII
WHD_SOWAH
BET
Motif
Other DBs
NCBI-GeneID:
111464093
NCBI-ProteinID:
XP_022963944
UniProt:
A0A6J1HLN5
LinkDB
All DBs
Position
Unknown
AA seq
1223 aa
AA seq
DB search
MEEEEDRIFLNSLGVTSANPEDIERDLIEEAKKNSENGADVGGIAEENACEKLDTTDLPS
ASHVLLHQKLRAVEYEINAVASTVESGKKLERNEQLSHVGADPQEHGREEDGVSASADGL
QHALAVDRLRSLKKTQQQLKKELSYLNDKHAETILEIVKDRSKPKRKSKEVKKSGKNGEK
RLKVVSFDEDNDFDAALDAATVGFVETERDELVRKGILTPFHKLKGFERRLQNPGQSSLQ
NPGQSRPEVKEEEEENDDFASDSVAKAVQSMSVAAQARPTTKLLDPEDLPKLDPPTRPFY
RLKKPAKVPLSAEDKATKKIKCKKTRRPLPDKKYRKQIAMEERDEEAAENMSDGLHTSGS
EREDSGDLEDDVNEPSSVTLEGGLKIPQSIFDQLFDYQKVGVQWLWELHCQRAGGIIGDE
MGLGKTVQVLAFLGALHFSNIYKPSIIVCPVTLVRQWKREARKWCPDLLVEILHDSAHDP
TYRKMREKSYESDESEDSEESDYGKNSQSKGTKKWDSLINRVLRSESSMLITTYEQLRLL
GGKLLDIEWGYAVLDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGSPIQNKLTELWSLFDF
VFPGKLGVLPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVN
AHLPKKTEHVLFCSLTSEQRSVYRAFLASSEVESILDGNRNSLSGIDVMRKICNHPDLLE
REHSFQNPDYGNPERSGKMKVVEQVLKVWKEQGHRVLLFAQTQQMLDILERFMVGGGYTY
RRMDGGTPVKQRMALIDEFNNSCEVFVFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDM
QARERAWRIGQQRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARDMK
DLFTLNEDAVDGSTETSNIFSELTDSVNVVGVQKNEKDEQKTGSGSVSYADSADEKPCKS
ETETSGRDDSVEMGQGRGADENENILKSLFDAHGIHSAVNHDIIFNADDGEKIRLEEQAS
QVARRAAEALRQSRILRSNERISVPTWTGKAGTAGAPSSVRRKFGSTVNSLVNNKSKSPD
EASRNGASHLNGLAAGTSSGKALSSAELLAKIRGNQERALSAGLEHHQPAPSSSSNNVRG
AGVGSSRSSKNLSGVQPEVLIRQICTFIQQRGGSADSASIVQHFKERIPSNDLPLFKNLL
KEIAILEKSPGGSFWVLKAEYKQ
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagaggaggatcggatttttctgaacagcttgggtgtgacgtctgctaatccg
gaggatatagaacgggacttgatagaggaggcaaaaaagaatagtgagaatggtgctgat
gttggaggaattgcagaagagaacgcctgtgagaagttagatactactgatttaccttct
gccagtcatgtgctgctccatcagaagcttagggctgttgaatacgagatcaatgctgtt
gcatcgacagtggaatcagggaagaaacttgaaagaaatgagcaactttctcatgttggc
gctgaccctcaggagcatgggcgtgaagaggacggtgtttcagcttctgcagatggcctt
cagcatgccctggctgttgacaggctaagaagcttgaagaaaacccaacagcagttgaag
aaagaactttcctatttgaacgacaagcatgccgagacaatattggagatagtcaaggac
agatcaaaacctaaaagaaagtctaaagaggttaagaaatcaggtaaaaatggagaaaag
aggttgaaagtcgtgtcatttgatgaagataacgattttgatgcagctttggatgcagcc
actgtgggctttgttgaaacagaaagagatgaattggtacggaagggaattttgacacca
tttcacaagctaaagggctttgaacgccgtcttcagaacccagggcaatcaagtcttcag
aaccctgggcaatcaaggcctgaagtaaaggaggaagaagaggaaaatgatgactttgct
tcggacagtgttgctaaagccgtccagtcaatgtcggtggctgcacaagctcgaccaacc
actaaattgcttgatccagaagatttgccgaagcttgatccgccaactcgtcctttttac
aggttaaaaaaacctgcaaaggttcccctatctgcagaagacaaagctacaaaaaaaata
aaatgcaaaaagactagacggcctttgccagacaaaaaatacagaaaacaaattgccatg
gaggaaagagacgaggaagctgctgagaatatgtcagatggtttacatacatcaggttct
gaaagagaagattcaggagatttagaagatgatgttaacgaaccttcttctgtaacgctt
gaaggcgggctgaaaattcctcagagcatatttgatcagctcttcgattaccaaaaagtt
ggggtccagtggttatgggaattgcactgccaaagggctggtggaattattggagatgag
atgggccttgggaaaacggtccaggtcttggcctttttaggtgcattacatttcagtaac
atttataaaccaagcatcatcgtctgccctgttacactagttagacagtggaagagggag
gcacggaaatggtgcccggaccttttggtggaaatccttcatgattctgctcatgatccc
acttacaggaagatgcgagagaaatcttatgaaagtgatgaaagtgaagattcagaggaa
agtgattatgggaaaaactcacagtccaaaggcacaaaaaaatgggattccttgataaac
cgtgttttgagatcagaatccagtatgctcattaccacttatgaacaactacgactgtta
ggtgggaagttgcttgacattgaatgggggtatgcagtcctggatgaaggtcatcgtatt
cgaaatccaaatgctgaagtcactttagtttgcaagcagctacagacagtacatcgcata
atcatgactggttctccaatccagaacaaattgactgagttgtggtccttgtttgatttc
gttttccctgggaagttgggggtgttgcctgtatttgaagcagagtttgcagttcctata
tctgttggtggctatgctaatgcctctccgttgcaagtatcaactgcatataggtgcgct
gtcgttcttcgtgacttaattatgccctatcttcttagaaggatgaaagctgatgtgaat
gctcatttgccaaagaagaccgaacacgttctcttctgcagtctaacttctgagcaacgt
tctgtctatagagcattccttgcaagctctgaagtggaaagtattttggatgggaataga
aattcactttctggaattgatgtaatgcgtaaaatttgcaaccacccagatctactcgag
agagaacactctttccaaaatcccgactacgggaatcctgaacgtagtggaaaaatgaag
gtggttgagcaagtgctgaaggtctggaaggagcaaggtcatcgtgttcttctttttgcg
cagacccaacagatgcttgacattttagagcgatttatggttggaggtggttatacttat
aggaggatggatggtggtactcctgtcaaacagagaatggccttgattgatgaattcaac
aattcatgtgaggtgtttgtttttattttaacaaccaaggttggtggtctaggaaccaac
ttaactggagcagatagggttataatcttcgaccctgattggaatccgtcaaccgacatg
caggcaagggagcgtgcttggcgtattggtcaacagcgggatgtgacggtgtatagattg
atcactcgtggaactatagaggagaaagtgtaccatcgacagatatataaacattttctc
actaataagatcttaaaaaacccacagcagagaaggttctttaaggctagagacatgaaa
gatctctttacactgaacgaggatgcggtggatggatcgacagaaacgtcgaatattttc
agtgagttgaccgatagtgtaaatgttgttggcgttcagaaaaatgagaaggacgaacaa
aaaactggcagtggctcggtatcgtatgcagattctgctgatgaaaaaccatgcaaatca
gagactgaaacttctggaagagatgattctgtagagatgggtcagggtcgtggagcagac
gaaaacgaaaatatcttgaagagcctctttgatgcgcatggtattcatagcgccgttaat
catgatatcatttttaacgctgatgatggggagaagatacgactagaggagcaagcttct
caagttgcacgtagagcagccgaggcattgcgccagtctagaattctacgaagtaacgag
cgtatctcagttccaacatggactggaaaagctggaaccgctggtgcgccatcgtccgtg
cgtcggaagttcggttcaaccgtcaactctctggtaaacaacaaatccaaatctccagat
gaagcatcaagaaatggagctagccatttaaatggccttgcagctggaacatcttccgga
aaggccttatcttcagctgagcttctggctaaaatcagaggaaaccaagaaagagcatta
agcgctgggcttgaacatcatcaaccagctccttcaagtagttcaaacaacgtacgaggt
gccggtgtcggttcttctcgatcatcgaagaacctttctggagtacaacccgaagtattg
attcggcagatatgtacgtttattcaacaaagaggcggatccgctgattcagccagtatt
gtacagcattttaaggagaggataccctcaaacgatttgcccttgtttaagaatctgctg
aaagagatagcaatattagagaaaagccccggtggatcattctgggttctgaaggcagag
tataaacagtaa
DBGET
integrated database retrieval system
